{
    "type": "genome",
    "identifier": "GCA_022841425.1",
    "organism": "Nitrosomonas ureae",
    "title": "Nitrosomonas ureae",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeastern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022841425.1",
        "bioproject": "PRJNA764197",
        "biosample": "SAMN21474429",
        "wgs_master": "JALHRN000000000.1",
        "refseq_category": "na",
        "taxid": "44577",
        "species_taxid": "44577",
        "organism_name": "Nitrosomonas ureae",
        "infraspecific_name": "",
        "isolate": "maxbin.168",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/08",
        "asm_name": "ASM2284142v1",
        "submitter": "Northeastern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/841/425/GCA_022841425.1_ASM2284142v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-08",
    "dateModified": "2022-04-08",
    "datePublished": "2022-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonas ureae"
        ],
        "sample_taxid": [
            "44577"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Ann Arbor, Michigan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.846 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.87,
        "contamination": 6.02,
        "strain_heterogeneity": 20.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2922170",
        "Number of Sequences": "740",
        "Longest Sequences (bp)": "26653",
        "N50 (bp)": "6076",
        "Gap Ratio (%)": "0.013004",
        "GCcontent (%)": "44.9",
        "Number of CDSs": "2159",
        "Average Protein Length": "274.4",
        "Coding Ratio (%)": "60.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_900105875.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.354,
                "matched_fragments": 535,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_001455205.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2138,
                "matched_fragments": 540,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nitrosomonas supralitoralis",
                "strain": "strain=APG5",
                "accession": "GCA_003011925.2",
                "taxid": 2116706,
                "species_taxid": 2116706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5438,
                "matched_fragments": 438,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas oligotropha",
                "strain": "strain=Nm45",
                "accession": "GCA_009833085.1",
                "taxid": 42354,
                "species_taxid": 42354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8422,
                "matched_fragments": 176,
                "total_fragments": 592,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 82.87,
            "contamination": 6.02,
            "strain_heterogeneity": 20.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001455205.1",
                "gtdb_species": "s__Nitrosomonas ureae",
                "ani": 98.2579,
                "matched_fragments": 539,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000175095.2",
                "gtdb_species": "s__Nitrosomonas sp000175095",
                "ani": 92.097,
                "matched_fragments": 513,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.06",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900108305.1",
                "gtdb_species": "s__Nitrosomonas ureae_B",
                "ani": 90.7801,
                "matched_fragments": 501,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902826915.1",
                "gtdb_species": "s__Nitrosomonas sp902826915",
                "ani": 83.4011,
                "matched_fragments": 430,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003011925.2",
                "gtdb_species": "s__Nitrosomonas sp003011925",
                "ani": 81.5282,
                "matched_fragments": 439,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106555.1",
                "gtdb_species": "s__Nitrosomonas oligotropha_A",
                "ani": 77.6592,
                "matched_fragments": 180,
                "total_fragments": 592,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "95.07",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.176,
        "doubling_h": 0.74,
        "growth_tmp": 27.75,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.5,
        "genome_size": 3297932.2,
        "gc_content": 44.49,
        "coding_genes": 2894.5,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 40.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Nitrosomonadaceae",
        "g__Nitrosomonas",
        "s__Nitrosomonas ureae"
    ],
    "_genome_taxon": [
        "Nitrosomonas",
        "ureae",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Nitrosomonadaceae",
        "g__Nitrosomonas",
        "s__Nitrosomonas ureae",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Nitrosomonadaceae",
        "Nitrosomonas",
        "Nitrosomonas",
        "ureae"
    ],
    "_meo": [
        {
            "id": "MEO_0001195",
            "label": "biofilter"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}