{ "type": "genome", "identifier": "GCA_022841565.1", "organism": "Mycobacterium sp.", "title": "Mycobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022841565.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474423", "wgs_master": "JALHRH000000000.1", "refseq_category": "na", "taxid": "1785", "species_taxid": "1785", "organism_name": "Mycobacterium sp.", "infraspecific_name": "", "isolate": "maxbin.118", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284156v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/841/565/GCA_022841565.1_ASM2284156v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium sp." ], "sample_taxid": [ "1785" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "1.700 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6084264", "Number of Sequences": "697", "Longest Sequences (bp)": "75140", "N50 (bp)": "13826", "Gap Ratio (%)": "0.008711", "GCcontent (%)": "65.7", "Number of CDSs": "4936", "Average Protein Length": "313.1", "Coding Ratio (%)": "76.2", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium paragordonae", "strain": "strain=49061", "accession": "GCA_003614435.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 85.3192, "matched_fragments": 1263, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paragordonae", "strain": "strain=JCM 18565", "accession": "GCA_010723415.1", "taxid": 1389713, "species_taxid": 1389713, "relation_to_type": "type", "validated": true, "ani": 85.205, "matched_fragments": 1284, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gordonae", "strain": "strain=DSM 44160", "accession": "GCA_002101675.1", "taxid": 1778, "species_taxid": 1778, "relation_to_type": "type", "validated": true, "ani": 85.0824, "matched_fragments": 1285, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium asiaticum", "strain": "strain=DSM 44297", "accession": "GCA_002086545.1", "taxid": 1790, "species_taxid": 1790, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2878, "matched_fragments": 990, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium asiaticum", "strain": "strain=DSM 44297", "accession": "GCA_000613245.1", "taxid": 1790, "species_taxid": 1790, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2833, "matched_fragments": 1003, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shinjukuense", "strain": "strain=JCM 14233", "accession": "GCA_010730055.1", "taxid": 398694, "species_taxid": 398694, "relation_to_type": "type", "validated": true, "ani": 80.9404, "matched_fragments": 798, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium vicinigordonae", "strain": "strain=24", "accession": "GCA_013466425.1", "taxid": 1719132, "species_taxid": 1719132, "relation_to_type": "type", "validated": true, "ani": 80.8937, "matched_fragments": 939, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium shinjukuense", "strain": "strain=CCUG 53584", "accession": "GCA_002086755.1", "taxid": 398694, "species_taxid": 398694, "relation_to_type": "type", "validated": true, "ani": 80.8805, "matched_fragments": 778, "total_fragments": 1676, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium innocens", "strain": "strain=MK13", "accession": "GCA_900566055.1", "taxid": 2341083, "species_taxid": 2341083, "relation_to_type": "type", "validated": true, 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