{ "type": "genome", "identifier": "GCA_022841605.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022841605.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474422", "wgs_master": "JALHRG000000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "maxbin.105_sub", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284160v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/841/605/GCA_022841605.1_ASM2284160v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "2.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.86, "contamination": 16.93, "strain_heterogeneity": 30.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "9832443", "Number of Sequences": "2175", "Longest Sequences (bp)": "38002", "N50 (bp)": "6100", "Gap Ratio (%)": "0.022273", "GCcontent (%)": "67.8", "Number of CDSs": "6485", "Average Protein Length": "326.1", "Coding Ratio (%)": "64.5", "Number of rRNAs": "1", "Number of tRNAs": "70", "Number of CRISPRs": "15" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polyangium spumosum", "strain": "strain=DSM 14734", "accession": "GCA_009649845.1", "taxid": 889282, "species_taxid": 889282, "relation_to_type": "type", "validated": true, "ani": 75.1712, "matched_fragments": 402, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 75.132, "matched_fragments": 390, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 75.0968, "matched_fragments": 292, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 75.0719, "matched_fragments": 449, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 75.039, "matched_fragments": 663, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.9391, "matched_fragments": 81, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_012910985.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.9002, "matched_fragments": 78, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluclasticum", "strain": "strain=MF63", "accession": "GCA_000378245.1", "taxid": 92003, "species_taxid": 92003, "relation_to_type": "type", "validated": true, "ani": 74.8614, "matched_fragments": 105, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 74.8563, "matched_fragments": 67, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.8426, "matched_fragments": 234, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 74.8347, "matched_fragments": 111, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 74.8344, "matched_fragments": 120, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 74.8175, "matched_fragments": 145, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides eburneiflavus", "strain": "strain=MMS17-SY213", "accession": "GCA_004785795.1", "taxid": 2518372, "species_taxid": 2518372, "relation_to_type": "type", "validated": true, "ani": 74.8107, "matched_fragments": 143, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium dextranolyticum", "strain": "strain=DSM 8607", "accession": "GCA_016907295.1", "taxid": 36806, "species_taxid": 36806, "relation_to_type": "type", "validated": true, "ani": 74.8056, "matched_fragments": 83, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium castoris", "strain": "strain=2020B", "accession": "GCA_003952025.1", "taxid": 2306972, "species_taxid": 2306972, "relation_to_type": "type", "validated": true, "ani": 74.7966, "matched_fragments": 56, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aromatica", "strain": "strain=K172", "accession": "GCA_003030465.1", "taxid": 59405, "species_taxid": 59405, "relation_to_type": "type", "validated": true, "ani": 74.7956, "matched_fragments": 65, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 74.7941, "matched_fragments": 110, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus metalli", "strain": "strain=DSM 27521", "accession": "GCA_014201805.1", "taxid": 1141878, "species_taxid": 1141878, "relation_to_type": "type", "validated": true, "ani": 74.7882, "matched_fragments": 68, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=NBRC 108778", "accession": "GCA_007992455.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 74.784, "matched_fragments": 103, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium saccharophilum", "strain": "strain=K-1", "accession": "GCA_008017435.1", "taxid": 1213358, "species_taxid": 1213358, "relation_to_type": "type", "validated": true, "ani": 74.7784, "matched_fragments": 106, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 74.7717, "matched_fragments": 137, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 74.7617, "matched_fragments": 69, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 74.7615, "matched_fragments": 131, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 74.7555, "matched_fragments": 71, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 74.7531, "matched_fragments": 163, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 74.7491, "matched_fragments": 353, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 74.7375, "matched_fragments": 113, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 74.7337, "matched_fragments": 66, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 74.7287, "matched_fragments": 124, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 74.71, "matched_fragments": 104, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium thalassium", "strain": "strain=DSM 12511", "accession": "GCA_014208045.1", "taxid": 362649, "species_taxid": 362649, "relation_to_type": "type", "validated": true, "ani": 74.71, "matched_fragments": 133, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium santillanense", "strain": "strain=MA2", "accession": "GCA_018555385.1", "taxid": 2809028, "species_taxid": 2809028, "relation_to_type": "type", "validated": true, "ani": 74.7091, "matched_fragments": 62, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 74.707, "matched_fragments": 144, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 74.7038, "matched_fragments": 147, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas groenlandica", "strain": "strain=TET16", "accession": "GCA_013004105.1", "taxid": 2732249, "species_taxid": 2732249, "relation_to_type": "type", "validated": true, "ani": 74.6936, "matched_fragments": 77, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 74.6643, "matched_fragments": 194, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiarcus fermentans", "strain": "strain=DSM 24875", "accession": "GCA_003315135.1", "taxid": 1473586, "species_taxid": 1473586, "relation_to_type": "type", "validated": true, "ani": 74.6583, "matched_fragments": 188, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium choerinum", "strain": "strain=DSM 20434", "accession": "GCA_000771425.1", "taxid": 35760, "species_taxid": 35760, "relation_to_type": "type", "validated": true, "ani": 74.5523, "matched_fragments": 56, "total_fragments": 2156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium choerinum", "strain": "strain=DSM 20434", "accession": "GCA_000484675.1", "taxid": 35760, "species_taxid": 35760, "relation_to_type": "type", "validated": true, "ani": 74.5481, "matched_fragments": 60, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903845045.1", "gtdb_species": "s__SCUS01 sp903845045", "ani": 75.578, "matched_fragments": 397, "total_fragments": 2156, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Ga0077539;g__SCUS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016709545.1", "gtdb_species": "s__JADJMO01 sp016709545", "ani": 75.2538, "matched_fragments": 403, "total_fragments": 2156, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JADJMO01;g__JADJMO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.09", 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