{ "type": "genome", "identifier": "GCA_022842065.1", "organism": "Caldilineaceae bacterium", "title": "Caldilineaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022842065.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474397", "wgs_master": "JALHQH000000000.1", "refseq_category": "na", "taxid": "2614250", "species_taxid": "2614250", "organism_name": "Caldilineaceae bacterium", "infraspecific_name": "", "isolate": "bin.77", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284206v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/842/065/GCA_022842065.1_ASM2284206v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Caldilineaceae bacterium" ], "sample_taxid": [ "2614250" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "3.570 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "12566563", "Number of Sequences": "108", "Longest Sequences (bp)": "489013", "N50 (bp)": "202348", "Gap Ratio (%)": "0.002865", "GCcontent (%)": "55.7", "Number of CDSs": "9902", "Average Protein Length": "364.8", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litorilinea aerophila", "strain": "strain=ATCC BAA-2444", "accession": "GCA_006569185.2", "taxid": 1204385, "species_taxid": 1204385, "relation_to_type": "type", "validated": true, "ani": 75.6147, "matched_fragments": 128, "total_fragments": 4135, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003577005.1", "gtdb_species": "s__CFX5 sp003577005", "ani": 75.8276, "matched_fragments": 254, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__CFX5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003451595.1", "gtdb_species": "s__Caldilinea sp003451595", "ani": 75.8166, "matched_fragments": 110, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016124945.1", "gtdb_species": "s__RI-153 sp016124945", "ani": 75.7848, "matched_fragments": 174, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__RI-153", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006569185.1", "gtdb_species": "s__Litorilinea aerophila", "ani": 75.6036, "matched_fragments": 127, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Litorilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016861025.1", "gtdb_species": "s__Caldilinea sp016861025", "ani": 75.5609, "matched_fragments": 126, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710365.1", "gtdb_species": "s__Caldilinea sp016710365", "ani": 75.5531, "matched_fragments": 143, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002238445.1", "gtdb_species": "s__Bin5 sp002238445", "ani": 75.5392, "matched_fragments": 58, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012032975.1", "gtdb_species": "s__JAAUPU01 sp012032975", "ani": 75.5091, "matched_fragments": 95, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAAUPU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018969295.1", "gtdb_species": "s__Caldilinea sp018969295", "ani": 75.4522, "matched_fragments": 106, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016199425.1", "gtdb_species": "s__JACQGT01 sp016199425", "ani": 75.2675, "matched_fragments": 82, "total_fragments": 4135, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JACQGT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.155, "doubling_h": 0.906, "growth_tmp": 54.666, "optimum_tmp": 55.0, "optimum_ph": 7.5, "genome_size": 5143605.4, "gc_content": 58.8, "coding_genes": 4056.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.333, "anaerobic_respiration": 0.333, "aerobic_respiration": 0.333, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__JAHBVH01", "s__JAHBVH01 sp022842065" ], "_genome_taxon": [ "Caldilineaceae", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__JAHBVH01", "s__JAHBVH01 sp022842065", "Bacteria", "Chloroflexota", "Anaerolineae", "Caldilineales", "Caldilineaceae", "JAHBVH01", "JAHBVH01", "sp022842065" ], "_meo": [ { "id": "MEO_0001195", "label": "biofilter" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }