{ "type": "genome", "identifier": "GCA_022842495.1", "organism": "Rhodocyclaceae bacterium", "title": "Rhodocyclaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022842495.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474374", "wgs_master": "JALHPK000000000.1", "refseq_category": "na", "taxid": "1898103", "species_taxid": "1898103", "organism_name": "Rhodocyclaceae bacterium", "infraspecific_name": "", "isolate": "bin.234_sub", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284249v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/842/495/GCA_022842495.1_ASM2284249v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodocyclaceae bacterium" ], "sample_taxid": [ "1898103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "0.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2354061", "Number of Sequences": "49", "Longest Sequences (bp)": "375010", "N50 (bp)": "159110", "Gap Ratio (%)": "0.009770", "GCcontent (%)": "56.6", "Number of CDSs": "2280", "Average Protein Length": "310.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Georgfuchsia toluolica", "strain": "strain=G5G6", "accession": "GCA_907163265.1", "taxid": 424218, "species_taxid": 424218, "relation_to_type": "type", "validated": true, "ani": 77.1322, "matched_fragments": 91, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azonexus hydrophilus", "strain": "strain=DSM 23864", "accession": "GCA_000429605.1", "taxid": 418702, "species_taxid": 418702, "relation_to_type": "type", "validated": true, "ani": 77.0803, "matched_fragments": 96, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis universalis", "strain": "strain=FAM5", 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"ani": 76.8344, "matched_fragments": 86, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus gracilis", "strain": "strain=DSM 110", "accession": "GCA_009617575.1", "taxid": 2929842, "species_taxid": 2929842, "relation_to_type": "type", "validated": true, "ani": 76.7625, "matched_fragments": 82, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 76.6921, "matched_fragments": 80, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionivibrio dicarboxylicus", "strain": "strain=DSM 5885", "accession": "GCA_900099695.1", "taxid": 83767, "species_taxid": 83767, "relation_to_type": "type", "validated": true, "ani": 76.6898, "matched_fragments": 69, 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"below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 76.5011, "matched_fragments": 100, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 76.4968, "matched_fragments": 93, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea aquatilis", "strain": "strain=THG-DN7.12", "accession": "GCA_005155025.1", "taxid": 1537400, "species_taxid": 1537400, "relation_to_type": "type", "validated": true, "ani": 76.2913, "matched_fragments": 61, "total_fragments": 762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum bremense", "strain": 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