{ "type": "genome", "identifier": "GCA_022842845.1", "organism": "Cyclobacteriaceae bacterium", "title": "Cyclobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022842845.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474357", "wgs_master": "JALHOT000000000.1", "refseq_category": "na", "taxid": "2099675", "species_taxid": "2099675", "organism_name": "Cyclobacteriaceae bacterium", "infraspecific_name": "", "isolate": "bin.177", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284284v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/842/845/GCA_022842845.1_ASM2284284v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyclobacteriaceae bacterium" ], "sample_taxid": [ "2099675" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3757720", "Number of Sequences": "47", "Longest Sequences (bp)": "436346", "N50 (bp)": "163656", "Gap Ratio (%)": "0.002395", "GCcontent (%)": "41.8", "Number of CDSs": "3143", "Average Protein Length": "355.3", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseotalea sanaruensis", "strain": "strain=Ys", "accession": "GCA_003990915.1", "taxid": 2482724, "species_taxid": 2482724, "relation_to_type": "type", "validated": true, "ani": 79.3455, "matched_fragments": 431, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseolinea serpens", "strain": "strain=DSM 24574", "accession": "GCA_900129725.1", "taxid": 947013, "species_taxid": 947013, "relation_to_type": "type", "validated": true, "ani": 77.176, "matched_fragments": 55, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseolinea soli", "strain": "strain=KIS68-18", "accession": "GCA_003589925.1", "taxid": 2321403, "species_taxid": 2321403, "relation_to_type": "type", "validated": true, "ani": 76.8243, "matched_fragments": 51, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ohtaekwangia koreensis", "strain": "strain=DSM 25262", "accession": "GCA_900167975.1", "taxid": 688867, "species_taxid": 688867, "relation_to_type": "type", "validated": true, "ani": 76.5648, "matched_fragments": 74, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003990915.1", "gtdb_species": "s__Chryseotalea sanaruensis", "ani": 79.357, "matched_fragments": 430, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464155.1", "gtdb_species": "s__Chryseotalea sp001464155", "ani": 78.4069, "matched_fragments": 296, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017303795.1", "gtdb_species": "s__ELB16-189 sp017303795", "ani": 77.907, "matched_fragments": 89, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002344065.1", "gtdb_species": "s__UBA2336 sp002344065", "ani": 77.3375, "matched_fragments": 73, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__UBA2336", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016712035.1", "gtdb_species": "s__ELB16-189 sp016712035", "ani": 77.0694, "matched_fragments": 67, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016735595.1", "gtdb_species": "s__Chryseolinea sp016735595", "ani": 76.6557, "matched_fragments": 56, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Chryseolinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018267275.1", "gtdb_species": "s__ELB16-189 sp018267275", "ani": 76.6202, "matched_fragments": 50, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900167975.1", "gtdb_species": "s__Ohtaekwangia koreensis", "ani": 76.6186, "matched_fragments": 71, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Ohtaekwangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001567185.1", "gtdb_species": "s__ELB16-189 sp001567185", "ani": 76.5805, "matched_fragments": 56, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002398365.1", "gtdb_species": "s__ELB16-189 sp002398365", "ani": 76.5797, "matched_fragments": 68, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016786585.1", "gtdb_species": "s__UBA2336 sp016786585", "ani": 76.5609, "matched_fragments": 55, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__UBA2336", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013140555.1", "gtdb_species": "s__ELB16-189 sp013140555", "ani": 76.3841, "matched_fragments": 54, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002425185.1", "gtdb_species": "s__UBA2336 sp002425185", "ani": 76.3625, "matched_fragments": 76, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__UBA2336", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902168185.1", "gtdb_species": "s__Ohtaekwangia sp902168185", "ani": 76.2123, "matched_fragments": 68, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Ohtaekwangia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002352225.1", "gtdb_species": "s__ELB16-189 sp002352225", "ani": 76.0325, "matched_fragments": 52, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_016178785.1", "gtdb_species": "s__ELB16-189 sp016178785", "ani": 76.0145, "matched_fragments": 51, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016191555.1", "gtdb_species": "s__ELB16-189 sp016191555", "ani": 75.5729, "matched_fragments": 56, "total_fragments": 1227, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__ELB16-189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.371, "cell_length": 0.212, "doubling_h": 0.69, "growth_tmp": 29.892, "optimum_tmp": 29.982, "optimum_ph": 7.789, "genome_size": 5000064.315, "gc_content": 42.262, "coding_genes": 4476.416, "rRNA16S_genes": 3.75, "tRNA_genes": 40.25, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.054, "range_salinity": 1.0, "facultative_respiration": 0.022, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.977, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.9, "coccus_cell_shape": 0.05, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.025, "spiral_cell_shape": 0.025 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Cytophagales", "f__Cyclobacteriaceae", "g__Chryseotalea", "s__Chryseotalea sp022842845" ], "_genome_taxon": [ "Cyclobacteriaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Cytophagales", "f__Cyclobacteriaceae", "g__Chryseotalea", "s__Chryseotalea sp022842845", "Bacteria", "Bacteroidota", "Bacteroidia", "Cytophagales", "Cyclobacteriaceae", "Chryseotalea", "Chryseotalea", "sp022842845" ], "_meo": [ { "id": "MEO_0001195", "label": "biofilter" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }