{ "type": "genome", "identifier": "GCA_022844385.1", "organism": "Hydrogenophaga sp.", "title": "Hydrogenophaga sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Northeastern University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022844385.1", "bioproject": "PRJNA764197", "biosample": "SAMN21474283", "wgs_master": "JALHLX000000000.1", "refseq_category": "na", "taxid": "1904254", "species_taxid": "1904254", "organism_name": "Hydrogenophaga sp.", "infraspecific_name": "", "isolate": "Bin_25_3", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2284438v1", "submitter": "Northeastern University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/844/385/GCA_022844385.1_ASM2284438v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophaga sp." ], "sample_taxid": [ "1904254" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ann Arbor, Michigan" ], "sample_host_location_id": [], "data_size": "1.075 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.29, "contamination": 8.85, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3896410", "Number of Sequences": "237", "Longest Sequences (bp)": "121464", "N50 (bp)": "22107", "Gap Ratio (%)": "0.151421", "GCcontent (%)": "65.5", "Number of CDSs": "3511", "Average Protein Length": "316.2", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 84.6015, "matched_fragments": 749, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 83.4566, "matched_fragments": 741, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 83.063, "matched_fragments": 758, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 83.0518, "matched_fragments": 740, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 82.6443, "matched_fragments": 716, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 82.3552, "matched_fragments": 703, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=DSM 5680", "accession": "GCA_005938115.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 82.3398, "matched_fragments": 730, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 82.3321, "matched_fragments": 710, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 82.2963, "matched_fragments": 741, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax soli", "strain": "strain=DSM 25157", "accession": "GCA_900107605.1", "taxid": 592050, "species_taxid": 592050, "relation_to_type": "type", "validated": true, "ani": 80.4534, "matched_fragments": 462, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 80.0171, "matched_fragments": 517, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax soli", "strain": "strain=DSM 21634", "accession": "GCA_003337555.1", "taxid": 545864, "species_taxid": 545864, "relation_to_type": "type", "validated": true, "ani": 79.7248, "matched_fragments": 567, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 79.5502, "matched_fragments": 515, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 79.5123, "matched_fragments": 458, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 79.5047, "matched_fragments": 537, "total_fragments": 1179, "ani_threshold": 95, "status": "below_threshold" }, { 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