{
    "type": "genome",
    "identifier": "GCA_022866745.1",
    "organism": "Dehalococcoidales bacterium",
    "title": "Dehalococcoidales bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022866745.1",
        "bioproject": "PRJNA821074",
        "biosample": "SAMN27120627",
        "wgs_master": "JALHUU000000000.1",
        "refseq_category": "na",
        "taxid": "2026733",
        "species_taxid": "2026733",
        "organism_name": "Dehalococcoidales bacterium",
        "infraspecific_name": "",
        "isolate": "PFL58",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/09",
        "asm_name": "ASM2286674v1",
        "submitter": "Radboud University Nijmegen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/866/745/GCA_022866745.1_ASM2286674v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-09",
    "dateModified": "2022-04-09",
    "datePublished": "2022-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dehalococcoidales bacterium"
        ],
        "sample_taxid": [
            "2026733"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia:Bykovsky Peninsula,Polar Fox Lagoon"
        ],
        "sample_host_location_id": [],
        "data_size": "0.459 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.55,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1592686",
        "Number of Sequences": "450",
        "Longest Sequences (bp)": "14265",
        "N50 (bp)": "3967",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.0",
        "Number of CDSs": "1245",
        "Average Protein Length": "265.0",
        "Coding Ratio (%)": "62.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.55,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001796935.1",
                "gtdb_species": "s__RBG-16-60-22 sp001796935",
                "ani": 77.598,
                "matched_fragments": 96,
                "total_fragments": 275,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales;f__RBG-16-60-22;g__RBG-16-60-22",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016926115.1",
                "gtdb_species": "s__JAFGPF01 sp016926115",
                "ani": 77.405,
                "matched_fragments": 71,
                "total_fragments": 275,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales;f__RBG-16-60-22;g__JAFGPF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016930185.1",
                "gtdb_species": "s__RBG-13-51-18 sp016930185",
                "ani": 77.0608,
                "matched_fragments": 52,
                "total_fragments": 275,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Dehalococcoidales;f__RBG-16-60-22;g__RBG-13-51-18",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.324,
        "cell_length": -0.188,
        "doubling_h": 1.283,
        "growth_tmp": null,
        "optimum_tmp": 31.0,
        "optimum_ph": 7.125,
        "genome_size": 1402762.309,
        "gc_content": 47.541,
        "coding_genes": 1445.27,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.269,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Dehalococcoidia",
        "o__Dehalococcoidales",
        "f__RBG-16-60-22",
        "g__",
        "s__"
    ],
    "_genome_taxon": [
        "Dehalococcoidales",
        "bacterium",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Dehalococcoidia",
        "o__Dehalococcoidales",
        "f__RBG-16-60-22",
        "g__",
        "s__",
        "Bacteria",
        "Chloroflexota",
        "Dehalococcoidia",
        "Dehalococcoidales",
        "RBG-16-60-22",
        "g",
        "",
        "",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        },
        {
            "id": "MEO_0001274",
            "label": "polar"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}