{ "type": "genome", "identifier": "GCA_022867235.1", "organism": "Desulfobacterales bacterium", "title": "Desulfobacterales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Radboud University Nijmegen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022867235.1", "bioproject": "PRJNA821074", "biosample": "SAMN27120679", "wgs_master": "JALHWU000000000.1", "refseq_category": "na", "taxid": "2044940", "species_taxid": "2044940", "organism_name": "Desulfobacterales bacterium", "infraspecific_name": "", "isolate": "PFL110", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/09", "asm_name": "ASM2286723v1", "submitter": "Radboud University Nijmegen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/867/235/GCA_022867235.1_ASM2286723v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-09", "dateModified": "2022-04-09", "datePublished": "2022-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobacterales bacterium" ], "sample_taxid": [ "2044940" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia:Bykovsky Peninsula,Polar Fox Lagoon" ], "sample_host_location_id": [], "data_size": "0.889 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.82, "contamination": 10.94, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3072259", "Number of Sequences": "873", "Longest Sequences (bp)": "81127", "N50 (bp)": "3990", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.7", "Number of CDSs": "2414", "Average Protein Length": "256.0", "Coding Ratio (%)": "60.3", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 67.82, "contamination": 10.94, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCA_002780715.1", "gtdb_species": "s__UBA1163 sp002780715", "ani": 80.0383, "matched_fragments": 195, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__UBA1163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002327985.1", "gtdb_species": "s__UBA1163 sp002327985", "ani": 78.2452, "matched_fragments": 134, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__UBA1163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002311635.1", "gtdb_species": "s__UBA1163 sp002311635", "ani": 77.6694, "matched_fragments": 125, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__UBA1163", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013388645.1", "gtdb_species": "s__UBA1163 sp013388645", 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"d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__RBG-16-49-23", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016875195.1", "gtdb_species": "s__RBG-16-49-23 sp016875195", "ani": 76.3813, "matched_fragments": 67, "total_fragments": 524, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__BSN033;o__BSN033;f__UBA1163;g__RBG-16-49-23", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.067, "cell_length": 0.331, "doubling_h": 1.346, "growth_tmp": 27.625, "optimum_tmp": 30.189, "optimum_ph": 7.333, "genome_size": 5179223.747, "gc_content": 51.027, "coding_genes": 4062.428, 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"\u2b50\ufe0f\u2b50\ufe0f" }