{ "type": "genome", "identifier": "GCA_023145015.1", "organism": "Candidatus Atribacteria bacterium", "title": "Candidatus Atribacteria bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023145015.1", "bioproject": "PRJNA707313", "biosample": "SAMN18451410", "wgs_master": "JAGLEO000000000.1", "refseq_category": "na", "taxid": "2053509", "species_taxid": "2053509", "organism_name": "Candidatus Atribacteria bacterium", "infraspecific_name": "", "isolate": "SW_4_65", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/26", "asm_name": "ASM2314501v1", "submitter": "Institute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/145/015/GCA_023145015.1_ASM2314501v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-26", "dateModified": "2022-04-26", "datePublished": "2022-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Atribacteria bacterium" ], "sample_taxid": [ "2053509" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], "sample_host_location_id": [], "data_size": "0.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.58, "contamination": 4.55, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1789701", "Number of Sequences": "659", "Longest Sequences (bp)": "15210", "N50 (bp)": "3184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.7", "Number of CDSs": "1277", "Average Protein Length": "249.7", "Coding Ratio (%)": "53.5", "Number of rRNAs": "1", "Number of tRNAs": "22", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 78.58, "contamination": 4.55, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003451675.1", "gtdb_species": "s__34-128 sp003451675", "ani": 79.7269, "matched_fragments": 86, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000405605.1", "gtdb_species": "s__34-128 sp000405605", "ani": 79.7115, "matched_fragments": 61, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000405345.1", "gtdb_species": "s__34-128 sp000405345", "ani": 79.6742, "matched_fragments": 55, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018819665.1", "gtdb_species": "s__34-128 sp018819665", "ani": 79.0951, "matched_fragments": 52, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003575245.1", "gtdb_species": "s__34-128 sp003575245", "ani": 78.807, "matched_fragments": 62, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002849045.2", "gtdb_species": "s__34-128 sp002849045", "ani": 78.7408, "matched_fragments": 53, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014894735.1", "gtdb_species": "s__34-128 sp014894735", "ani": 78.6793, "matched_fragments": 55, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001773955.1", "gtdb_species": "s__34-128 sp001773955", "ani": 78.5508, "matched_fragments": 75, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011056645.1", "gtdb_species": "s__34-128 sp011056645", "ani": 77.2434, "matched_fragments": 64, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__34-128", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002782675.1", "gtdb_species": "s__CG2-30-33-13 sp002782675", "ani": 76.4145, "matched_fragments": 58, "total_fragments": 256, "gtdb_taxonomy": "d__Bacteria;p__Atribacterota;c__JS1;o__SB-45;f__34-128;g__CG2-30-33-13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Atribacterota", "c__JS1", "o__SB-45", "f__34-128", "g__", "s__" ], "_genome_taxon": [ "Candidatus", "Atribacteria", "bacterium", "d__Bacteria", "p__Atribacterota", "c__JS1", "o__SB-45", "f__34-128", "g__", "s__", "Bacteria", "Atribacterota", "JS1", "SB-45", "34-128", "g", "", "", "s", "", "" ], "_meo": [ { "id": "MEO_0001170", "label": "cold seep" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }