{ "type": "genome", "identifier": "GCA_023150775.1", "organism": "Myxococcota bacterium", "title": "Myxococcota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "NanJing University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023150775.1", "bioproject": "PRJNA797516", "biosample": "SAMN25008097", "wgs_master": "JAKLKE000000000.1", "refseq_category": "na", "taxid": "2818507", "species_taxid": "2818507", "organism_name": "Myxococcota bacterium", "infraspecific_name": "", "isolate": "MAG.430", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2315077v1", "submitter": "NanJing University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/150/775/GCA_023150775.1_ASM2315077v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcota bacterium" ], "sample_taxid": [ "2818507" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Nanjing" ], "sample_host_location_id": [], "data_size": "1.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7010564", "Number of Sequences": "837", "Longest Sequences (bp)": "123839", "N50 (bp)": "13847", "Gap Ratio (%)": "0.026189", "GCcontent (%)": "69.2", "Number of CDSs": "5414", "Average Protein Length": "338.8", "Coding Ratio (%)": "78.5", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 75.0874, "matched_fragments": 179, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lujinxingia vulgaris", "strain": "strain=TMQ4", "accession": "GCA_007997015.1", "taxid": 2600176, "species_taxid": 2600176, "relation_to_type": "type", "validated": true, "ani": 75.0569, "matched_fragments": 98, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 75.0399, "matched_fragments": 121, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 75.0075, "matched_fragments": 99, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exiguus", "strain": "strain=DSM 14696", "accession": "GCA_009909105.1", "taxid": 83462, "species_taxid": 83462, "relation_to_type": "type", "validated": true, "ani": 74.9939, "matched_fragments": 176, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 74.9659, "matched_fragments": 149, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 74.9595, "matched_fragments": 92, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus praedator", "strain": "strain=CA031B", "accession": "GCA_003612125.1", "taxid": 2316724, "species_taxid": 2316724, "relation_to_type": "type", "validated": true, "ani": 74.9361, "matched_fragments": 162, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 74.9154, "matched_fragments": 90, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.8762, "matched_fragments": 212, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium mesophilum", "strain": "strain=DSM 19309", "accession": "GCA_000600335.2", "taxid": 1123067, "species_taxid": 1123067, "relation_to_type": "type", "validated": true, "ani": 74.8745, "matched_fragments": 122, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 74.8536, "matched_fragments": 110, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanithermus profundus", "strain": "strain=DSM 14977", "accession": "GCA_000183745.1", "taxid": 187137, "species_taxid": 187137, "relation_to_type": "type", "validated": true, "ani": 74.8506, "matched_fragments": 81, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 74.8291, "matched_fragments": 196, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 74.8255, "matched_fragments": 74, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 74.8255, "matched_fragments": 74, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", "accession": "GCA_003752505.1", "taxid": 86796, "species_taxid": 86796, "relation_to_type": "type", "validated": true, "ani": 74.8075, "matched_fragments": 151, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 74.7984, "matched_fragments": 53, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium avium", "strain": "strain=VR2415", "accession": "GCA_002216795.1", "taxid": 2017485, "species_taxid": 2017485, "relation_to_type": "type", "validated": true, "ani": 74.7792, "matched_fragments": 99, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia takedensis", "strain": "strain=NBRC 100417", "accession": "GCA_000308695.1", "taxid": 259390, "species_taxid": 259390, "relation_to_type": "type", "validated": true, "ani": 74.7582, "matched_fragments": 157, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 74.756, "matched_fragments": 61, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas aeria", "strain": "strain=CFCC 13393", "accession": "GCA_009760915.1", "taxid": 2590212, "species_taxid": 2590212, "relation_to_type": "type", "validated": true, "ani": 74.7506, "matched_fragments": 192, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Calidithermus roseus", "strain": "strain=NBRC 110900", "accession": "GCA_003574095.1", "taxid": 1644118, "species_taxid": 1644118, "relation_to_type": "type", "validated": true, "ani": 74.7502, "matched_fragments": 53, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus rhododendri", "strain": "strain=KACC 21265", "accession": "GCA_009906855.1", "taxid": 2697032, "species_taxid": 2697032, "relation_to_type": "type", "validated": true, "ani": 74.7431, "matched_fragments": 128, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermasporomyces composti", "strain": "strain=DSM 22891", "accession": "GCA_003386795.1", "taxid": 696763, "species_taxid": 696763, "relation_to_type": "type", "validated": true, "ani": 74.6248, "matched_fragments": 75, "total_fragments": 1912, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016717595.1", "gtdb_species": "s__JADKFE01 sp016717595", "ani": 92.4416, "matched_fragments": 1636, "total_fragments": 1912, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__CAJQPC01;g__JADKFE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016875315.1", "gtdb_species": "s__SXON01 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