{ "type": "genome", "identifier": "GCA_023150955.1", "organism": "Polyangiaceae bacterium", "title": "Polyangiaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "NanJing University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023150955.1", "bioproject": "PRJNA797516", "biosample": "SAMN25008092", "wgs_master": "JAKLJZ000000000.1", "refseq_category": "na", "taxid": "2268199", "species_taxid": "2268199", "organism_name": "Polyangiaceae bacterium", "infraspecific_name": "", "isolate": "MAG.194", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2315095v1", "submitter": "NanJing University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/150/955/GCA_023150955.1_ASM2315095v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Polyangiaceae bacterium" ], "sample_taxid": [ "2268199" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Nanjing" ], "sample_host_location_id": [], "data_size": "2.248 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "8058252", "Number of Sequences": "2125", "Longest Sequences (bp)": "19968", "N50 (bp)": "4366", "Gap Ratio (%)": "0.038582", "GCcontent (%)": "65.8", "Number of CDSs": "4780", "Average Protein Length": "312.0", "Coding Ratio (%)": "55.5", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polyangium spumosum", "strain": "strain=DSM 14734", "accession": "GCA_009649845.1", "taxid": 889282, "species_taxid": 889282, "relation_to_type": "type", "validated": true, "ani": 77.1839, "matched_fragments": 469, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 77.0273, "matched_fragments": 493, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 76.9958, "matched_fragments": 459, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chondromyces crocatus", "strain": "strain=Cm c5", "accession": "GCA_001189295.1", "taxid": 52, "species_taxid": 52, "relation_to_type": "type", "validated": true, "ani": 76.4937, "matched_fragments": 259, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 75.6753, "matched_fragments": 195, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 75.1249, "matched_fragments": 276, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 74.9795, "matched_fragments": 61, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 74.9537, "matched_fragments": 62, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 74.9418, "matched_fragments": 76, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 74.8945, "matched_fragments": 65, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides antri", "strain": "strain=BN140041", "accession": "GCA_008373765.1", "taxid": 2607659, "species_taxid": 2607659, "relation_to_type": "type", "validated": true, "ani": 74.889, "matched_fragments": 66, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides thalensis", "strain": "strain=DSM 103833", "accession": "GCA_013410655.1", "taxid": 1914755, "species_taxid": 1914755, "relation_to_type": "type", "validated": true, "ani": 74.7761, "matched_fragments": 83, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 74.7709, "matched_fragments": 93, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus kebangsaanensis", "strain": "strain=P2D13-UKM", "accession": "GCA_008919445.1", "taxid": 2602069, "species_taxid": 2602069, "relation_to_type": "type", "validated": true, "ani": 74.6284, "matched_fragments": 50, "total_fragments": 1518, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.98, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009649845.1", "gtdb_species": "s__Polyangium spumosum", "ani": 77.2401, "matched_fragments": 460, "total_fragments": 1518, "gtdb_taxonomy": 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