{ "type": "genome", "identifier": "GCA_023249845.1", "organism": "Candidatus Eisenbacteria bacterium", "title": "Candidatus Eisenbacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023249845.1", "bioproject": "PRJNA699054", "biosample": "SAMN19017162", "wgs_master": "JAHFBW000000000.1", "refseq_category": "na", "taxid": "2212470", "species_taxid": "2212470", "organism_name": "Candidatus Eisenbacteria bacterium", "infraspecific_name": "", "isolate": "nzgw207", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/06", "asm_name": "ASM2324984v1", "submitter": "The University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/249/845/GCA_023249845.1_ASM2324984v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-06", "dateModified": "2022-05-06", "datePublished": "2022-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Eisenbacteria bacterium" ], "sample_taxid": [ "2212470" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Canterbury region" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3589030", "Number of Sequences": "433", "Longest Sequences (bp)": "55597", "N50 (bp)": "10512", "Gap Ratio (%)": "0.013235", "GCcontent (%)": "69.4", "Number of CDSs": "2710", "Average Protein Length": "334.0", "Coding Ratio (%)": "75.7", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.911, "matched_fragments": 114, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 74.8911, "matched_fragments": 106, "total_fragments": 978, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016215625.1", "gtdb_species": "s__CAIXRL01 sp016215625", "ani": 78.42, "matched_fragments": 388, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__CAIXRL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710095.1", "gtdb_species": "s__CAIXRL01 sp016710095", "ani": 78.4022, "matched_fragments": 388, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__CAIXRL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903921835.1", "gtdb_species": "s__CAIXRL01 sp903921835", "ani": 78.297, "matched_fragments": 239, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__CAIXRL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826705.1", "gtdb_species": "s__CADEFY01 sp902826705", "ani": 78.0586, "matched_fragments": 272, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__CADEFY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016223045.1", "gtdb_species": "s__JACRPT01 sp016223045", "ani": 77.8106, "matched_fragments": 320, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__JACRPT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011357805.1", "gtdb_species": "s__DSQF01 sp011357805", "ani": 77.4817, "matched_fragments": 353, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Eisenbacteria;c__RBG-16-71-46;o__RBG-16-71-46;f__RBG-16-71-46;g__DSQF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010894455.1", "gtdb_species": "s__Myxococcus eversor", "ani": 74.8703, "matched_fragments": 96, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "99.18", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900106535.1", "gtdb_species": "s__Myxococcus xanthus", "ani": 74.8081, "matched_fragments": 85, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Myxococcus", "ani_circumscription_radius": 96.8216, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_009909105.1", "gtdb_species": "s__Corallococcus exiguus", "ani": 74.8023, "matched_fragments": 105, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "96.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_003612165.1", "gtdb_species": "s__Corallococcus aberystwythensis", "ani": 74.7539, "matched_fragments": 99, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611695.1", "gtdb_species": "s__Corallococcus carmarthensis", "ani": 74.7422, "matched_fragments": 107, "total_fragments": 978, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Eisenbacteria", "c__RBG-16-71-46", "o__RBG-16-71-46", "f__RBG-16-71-46", "g__JAIOPA01", "s__JAIOPA01 sp023249845" ], "_genome_taxon": [ "Candidatus", "Eisenbacteria", "bacterium", "d__Bacteria", "p__Eisenbacteria", "c__RBG-16-71-46", "o__RBG-16-71-46", "f__RBG-16-71-46", "g__JAIOPA01", "s__JAIOPA01 sp023249845", "Bacteria", "Eisenbacteria", "RBG-16-71-46", "RBG-16-71-46", "RBG-16-71-46", "JAIOPA01", "JAIOPA01", "sp023249845" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }