{ "type": "genome", "identifier": "GCA_023253295.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "South China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023253295.1", "bioproject": "PRJNA730330", "biosample": "SAMN27163962", "wgs_master": "JALRGZ000000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "MLJ.21", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/06", "asm_name": "ASM2325329v1", "submitter": "South China Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/253/295/GCA_023253295.1_ASM2325329v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-06", "dateModified": "2022-05-06", "datePublished": "2022-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Esturies of South China" ], "sample_host_location_id": [], "data_size": "0.840 MB", "sample_ph_range": { "min": 791.0, "max": 791.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2986510", "Number of Sequences": "340", "Longest Sequences (bp)": "43120", "N50 (bp)": "10872", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.5", "Number of CDSs": "2247", "Average Protein Length": "340.2", "Coding Ratio (%)": "76.8", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_007989005.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.663, "matched_fragments": 558, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.6459, "matched_fragments": 568, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=NBRC 105008", "accession": "GCA_001686935.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 82.6242, "matched_fragments": 561, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pokkalii", "strain": "strain=L1I52", "accession": "GCA_014596575.1", "taxid": 1940408, "species_taxid": 1940408, "relation_to_type": "type", "validated": true, "ani": 81.9541, "matched_fragments": 560, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 81.8082, "matched_fragments": 567, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium commune", "strain": "strain=PK15", "accession": "GCA_001857965.1", "taxid": 1306519, "species_taxid": 1306519, "relation_to_type": "type", "validated": true, "ani": 81.5018, "matched_fragments": 504, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 81.4902, "matched_fragments": 525, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 81.2407, "matched_fragments": 501, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 80.7945, "matched_fragments": 491, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=DSM 1076", "accession": "GCA_900142775.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 80.676, "matched_fragments": 506, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 80.6416, "matched_fragments": 497, "total_fragments": 819, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.19, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002454195.1", "gtdb_species": "s__Flavobacterium sp002454195", "ani": 85.0388, "matched_fragments": 394, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100165.1", "gtdb_species": "s__Flavobacterium glycines", "ani": 82.6462, "matched_fragments": 568, "total_fragments": 819, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014596575.1", "gtdb_species": "s__Flavobacterium pokkalii", "ani": 81.9677, "matched_fragments": 559, "total_fragments": 819, "gtdb_taxonomy": 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