{ "type": "genome", "identifier": "GCA_023253905.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "South China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023253905.1", "bioproject": "PRJNA730330", "biosample": "SAMN27163891", "wgs_master": "JALREG000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "JTM.43", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/06", "asm_name": "ASM2325390v1", "submitter": "South China Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/253/905/GCA_023253905.1_ASM2325390v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-06", "dateModified": "2022-05-06", "datePublished": "2022-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Esturies of South China" ], "sample_host_location_id": [], "data_size": "1.015 MB", "sample_ph_range": { "min": 7919999999999999.0, "max": 7919999999999999.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.03, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3596744", "Number of Sequences": "438", "Longest Sequences (bp)": "34456", "N50 (bp)": "10330", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "3001", "Average Protein Length": "317.0", "Coding Ratio (%)": "79.3", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 76.3499, "matched_fragments": 56, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 76.3186, "matched_fragments": 57, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum humi", "strain": "strain=U15", "accession": "GCA_900188095.1", "taxid": 1688639, "species_taxid": 1688639, "relation_to_type": "type", "validated": true, "ani": 76.0339, "matched_fragments": 69, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia insidiosa", "strain": "strain=CCUG 46789", "accession": "GCA_008801405.1", "taxid": 190721, "species_taxid": 190721, "relation_to_type": "type", "validated": true, "ani": 75.9962, "matched_fragments": 60, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, "relation_to_type": "type", "validated": true, "ani": 75.9581, "matched_fragments": 95, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia mirabilis", "strain": "strain=NCTC12852", "accession": "GCA_900637555.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 75.9324, "matched_fragments": 61, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lautropia mirabilis", "strain": "strain=ATCC 51599", "accession": "GCA_000186425.1", "taxid": 47671, "species_taxid": 47671, "relation_to_type": "type", "validated": true, "ani": 75.8947, "matched_fragments": 59, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus metallidurans", "strain": "strain=CH34", "accession": "GCA_000196015.1", "taxid": 119219, "species_taxid": 119219, "relation_to_type": "type", "validated": true, "ani": 75.8067, "matched_fragments": 63, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia eburnea", "strain": "strain=JCM 18070", "accession": "GCA_002917095.1", "taxid": 1189126, "species_taxid": 1189126, "relation_to_type": "type", "validated": true, "ani": 75.7337, "matched_fragments": 65, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bannensis", "strain": "strain=NBRC 103871", "accession": "GCA_000685015.1", "taxid": 765414, "species_taxid": 765414, "relation_to_type": "type", "validated": true, "ani": 75.7323, "matched_fragments": 57, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=NBRC 13700", "accession": "GCA_000739755.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 75.6621, "matched_fragments": 90, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 53.03, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018969885.1", "gtdb_species": "s__SYIM01 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"Burkholderiaceae", "SYIM01", "SYIM01", "sp023253905" ], "_meo": [ { "id": "MEO_0000087", "label": "estuary" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }