{
    "type": "genome",
    "identifier": "GCA_023257075.1",
    "organism": "Nocardioides sp.",
    "title": "Nocardioides sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "South China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023257075.1",
        "bioproject": "PRJNA730330",
        "biosample": "SAMN27163863",
        "wgs_master": "JALRDE000000000.1",
        "refseq_category": "na",
        "taxid": "35761",
        "species_taxid": "35761",
        "organism_name": "Nocardioides sp.",
        "infraspecific_name": "",
        "isolate": "JJ.29",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/06",
        "asm_name": "ASM2325707v1",
        "submitter": "South China Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/257/075/GCA_023257075.1_ASM2325707v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-06",
    "dateModified": "2022-05-06",
    "datePublished": "2022-05-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardioides sp."
        ],
        "sample_taxid": [
            "35761"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Esturies of South China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.738 MB",
        "sample_ph_range": {
            "min": 821.0,
            "max": 821.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 32.27,
        "contamination": 4.63,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2752522",
        "Number of Sequences": "672",
        "Longest Sequences (bp)": "35142",
        "N50 (bp)": "4727",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.1",
        "Number of CDSs": "2179",
        "Average Protein Length": "276.5",
        "Coding Ratio (%)": "65.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nocardioides marinus",
                "strain": "strain=DSM 18248",
                "accession": "GCA_013408145.1",
                "taxid": 374514,
                "species_taxid": 374514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3701,
                "matched_fragments": 439,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides deserti",
                "strain": "strain=SC8A-24",
                "accession": "GCA_014266025.1",
                "taxid": 1588644,
                "species_taxid": 1588644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.759,
                "matched_fragments": 334,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides deserti",
                "strain": "strain=CGMCC 4.7183",
                "accession": "GCA_014646035.1",
                "taxid": 1588644,
                "species_taxid": 1588644,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7042,
                "matched_fragments": 335,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides dongkuii",
                "strain": "strain=S-713",
                "accession": "GCA_014127485.1",
                "taxid": 2760089,
                "species_taxid": 2760089,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2477,
                "matched_fragments": 315,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides acrostichi",
                "strain": "strain=CBS4Y-1",
                "accession": "GCA_015319165.1",
                "taxid": 2784339,
                "species_taxid": 2784339,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7442,
                "matched_fragments": 318,
                "total_fragments": 559,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 32.27,
            "contamination": 4.63,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009701885.1",
                "gtdb_species": "s__Nocardioides sp009701885",
                "ani": 95.9579,
                "matched_fragments": 503,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001627335.1",
                "gtdb_species": "s__Nocardioides sp001627335",
                "ani": 84.4499,
                "matched_fragments": 397,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "96.50",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_013408145.1",
                "gtdb_species": "s__Nocardioides marinus",
                "ani": 84.2966,
                "matched_fragments": 443,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.85",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014127485.1",
                "gtdb_species": "s__Nocardioides sp014127485",
                "ani": 79.2642,
                "matched_fragments": 314,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003710085.1",
                "gtdb_species": "s__Nocardioides sp003710085",
                "ani": 78.7208,
                "matched_fragments": 279,
                "total_fragments": 559,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.295,
        "cell_length": 0.117,
        "doubling_h": null,
        "growth_tmp": 27.661,
        "optimum_tmp": 28.172,
        "optimum_ph": 7.323,
        "genome_size": 4214904.166,
        "gc_content": 71.317,
        "coding_genes": 4058.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.023,
        "motility": 0.217,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.893,
        "coccus_cell_shape": 0.021,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.085,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Propionibacteriales",
        "f__Nocardioidaceae",
        "g__Nocardioides",
        "s__Nocardioides sp009701885"
    ],
    "_genome_taxon": [
        "Nocardioides",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Propionibacteriales",
        "f__Nocardioidaceae",
        "g__Nocardioides",
        "s__Nocardioides sp009701885",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Propionibacteriales",
        "Nocardioidaceae",
        "Nocardioides",
        "Nocardioides",
        "sp009701885"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}