{
    "type": "genome",
    "identifier": "GCA_023260505.1",
    "organism": "Porticoccaceae bacterium",
    "title": "Porticoccaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "South China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023260505.1",
        "bioproject": "PRJNA730330",
        "biosample": "SAMN27163653",
        "wgs_master": "JALQVC000000000.1",
        "refseq_category": "na",
        "taxid": "2026782",
        "species_taxid": "2026782",
        "organism_name": "Porticoccaceae bacterium",
        "infraspecific_name": "",
        "isolate": "FCJ.19",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/06",
        "asm_name": "ASM2326050v1",
        "submitter": "South China Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/260/505/GCA_023260505.1_ASM2326050v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-06",
    "dateModified": "2022-05-06",
    "datePublished": "2022-05-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porticoccaceae bacterium"
        ],
        "sample_taxid": [
            "2026782"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Esturies of South China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.505 MB",
        "sample_ph_range": {
            "min": 7936666666666667.0,
            "max": 7936666666666667.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.81,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1769020",
        "Number of Sequences": "352",
        "Longest Sequences (bp)": "33244",
        "N50 (bp)": "7668",
        "Gap Ratio (%)": "0.029395",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "1370",
        "Average Protein Length": "309.8",
        "Coding Ratio (%)": "72.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9009,
                "matched_fragments": 55,
                "total_fragments": 426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas citronellolis",
                "strain": "strain=NBRC 103043",
                "accession": "GCA_002091555.1",
                "taxid": 53408,
                "species_taxid": 53408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6231,
                "matched_fragments": 54,
                "total_fragments": 426,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas insulae",
                "strain": "strain=UL073",
                "accession": "GCA_016901015.1",
                "taxid": 2809017,
                "species_taxid": 2809017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3349,
                "matched_fragments": 55,
                "total_fragments": 426,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 64.81,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004535795.1",
                "gtdb_species": "s__LSUCC0057 sp004535795",
                "ani": 98.4761,
                "matched_fragments": 412,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__LSUCC0057",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018398425.1",
                "gtdb_species": "s__Pseudomonas_E lalucatii",
                "ani": 75.9009,
                "matched_fragments": 55,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900112375.1",
                "gtdb_species": "s__Pseudomonas citronellolis",
                "ani": 75.6059,
                "matched_fragments": 55,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas",
                "ani_circumscription_radius": 95.078,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_016901015.1",
                "gtdb_species": "s__Pseudomonas_E sp016901015",
                "ani": 75.3349,
                "matched_fragments": 55,
                "total_fragments": 426,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": -0.31,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 2547762.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__LSUCC0057",
        "s__LSUCC0057 sp004535795"
    ],
    "_genome_taxon": [
        "Porticoccaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__LSUCC0057",
        "s__LSUCC0057 sp004535795",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Porticoccaceae",
        "LSUCC0057",
        "LSUCC0057",
        "sp004535795"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}