{ "type": "genome", "identifier": "GCA_023260795.1", "organism": "Luminiphilus sp.", "title": "Luminiphilus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "South China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023260795.1", "bioproject": "PRJNA730330", "biosample": "SAMN27163631", "wgs_master": "JALQUG000000000.1", "refseq_category": "na", "taxid": "2590574", "species_taxid": "2590574", "organism_name": "Luminiphilus sp.", "infraspecific_name": "", "isolate": "DFJ.18", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/06", "asm_name": "ASM2326079v1", "submitter": "South China Agricultural University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/260/795/GCA_023260795.1_ASM2326079v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-06", "dateModified": "2022-05-06", "datePublished": "2022-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Luminiphilus sp." ], "sample_taxid": [ "2590574" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Esturies of South China" ], "sample_host_location_id": [], "data_size": "0.461 MB", "sample_ph_range": { "min": 8230000000000002.0, "max": 8230000000000002.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 35.42, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1576151", "Number of Sequences": "346", "Longest Sequences (bp)": "29225", "N50 (bp)": "6700", "Gap Ratio (%)": "0.016813", "GCcontent (%)": "56.5", "Number of CDSs": "1274", "Average Protein Length": "297.7", "Coding Ratio (%)": "72.2", "Number of rRNAs": "0", "Number of tRNAs": "12", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 35.42, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_016778045.1", "gtdb_species": "s__Luminiphilus sp016778045", "ani": 84.6489, "matched_fragments": 75, "total_fragments": 366, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002377985.1", "gtdb_species": "s__Luminiphilus sp002377985", "ani": 78.1716, "matched_fragments": 102, "total_fragments": 366, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016779445.1", "gtdb_species": "s__Luminiphilus sp016779445", "ani": 77.5103, "matched_fragments": 82, "total_fragments": 366, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_008081075.1", "gtdb_species": "s__Luminiphilus sp008081075", "ani": 77.3352, "matched_fragments": 73, "total_fragments": 366, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018222695.1", "gtdb_species": "s__Luminiphilus sp018222695", "ani": 77.0953, "matched_fragments": 51, "total_fragments": 366, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Halieaceae", "g__Luminiphilus", "s__" ], "_genome_taxon": [ "Luminiphilus", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Halieaceae", "g__Luminiphilus", "s__", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Halieaceae", "Luminiphilus", "s", "", "" ], "_meo": [ { "id": "MEO_0000087", "label": "estuary" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }