{ "type": "genome", "identifier": "GCA_023265045.1", "organism": "Acidimicrobiia bacterium", "title": "Acidimicrobiia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023265045.1", "bioproject": "PRJNA699054", "biosample": "SAMN19017651", "wgs_master": "JAHFUQ000000000.1", "refseq_category": "na", "taxid": "2080302", "species_taxid": "2080302", "organism_name": "Acidimicrobiia bacterium", "infraspecific_name": "", "isolate": "nzgw83", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/06", "asm_name": "ASM2326504v1", "submitter": "The University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/265/045/GCA_023265045.1_ASM2326504v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-06", "dateModified": "2022-05-06", "datePublished": "2022-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiia bacterium" ], "sample_taxid": [ "2080302" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Canterbury region" ], "sample_host_location_id": [], "data_size": "1.175 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4309247", "Number of Sequences": "323", "Longest Sequences (bp)": "111013", "N50 (bp)": "24888", "Gap Ratio (%)": "0.006962", "GCcontent (%)": "71.3", "Number of CDSs": "4108", "Average Protein Length": "291.9", "Coding Ratio (%)": "83.5", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.3227, "matched_fragments": 223, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.2747, "matched_fragments": 156, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.2735, "matched_fragments": 226, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.6476, "matched_fragments": 140, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.6001, "matched_fragments": 201, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 75.4491, "matched_fragments": 95, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia taihuensis", "strain": "strain=CGMCC 1.12303", "accession": "GCA_014653095.1", "taxid": 1225127, "species_taxid": 1225127, "relation_to_type": "type", "validated": true, "ani": 75.3245, "matched_fragments": 193, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia taihuensis", "strain": "strain=DSM 45962", "accession": "GCA_900112525.1", "taxid": 1225127, "species_taxid": 1225127, "relation_to_type": "type", "validated": true, "ani": 75.3172, "matched_fragments": 197, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 75.2816, "matched_fragments": 181, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rubripertincta", "strain": "strain=NBRC 101908", "accession": "GCA_000327325.1", "taxid": 36822, "species_taxid": 36822, "relation_to_type": "type", "validated": true, "ani": 75.2249, "matched_fragments": 97, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus tenebrarius", "strain": "strain=DSM 40477", "accession": "GCA_024171885.1", "taxid": 1933, "species_taxid": 1933, "relation_to_type": "type", "validated": true, "ani": 75.2065, "matched_fragments": 174, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 75.1714, "matched_fragments": 190, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lushanensis", "strain": "strain=NRRL B-24994", "accession": "GCA_001700515.1", "taxid": 1434255, "species_taxid": 1434255, "relation_to_type": "type", "validated": true, "ani": 75.1073, "matched_fragments": 133, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia soli", "strain": "strain=NRRL B-16219", "accession": "GCA_001854695.1", "taxid": 2599596, "species_taxid": 2599596, "relation_to_type": "type", "validated": true, "ani": 75.0528, "matched_fragments": 192, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora rubra", "strain": "strain=DSM 44948", "accession": "GCA_015356825.1", "taxid": 280293, "species_taxid": 280293, "relation_to_type": "type", "validated": true, "ani": 75.0447, "matched_fragments": 230, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 75.0005, "matched_fragments": 59, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 74.9907, "matched_fragments": 96, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 74.9818, "matched_fragments": 75, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas endophytica", "strain": "strain=DSM 101535", "accession": "GCA_014199415.1", "taxid": 869719, "species_taxid": 869719, "relation_to_type": "type", "validated": true, "ani": 74.7105, "matched_fragments": 63, "total_fragments": 1268, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902805665.1", "gtdb_species": "s__CADCTB01 sp902805665", "ani": 77.9808, "matched_fragments": 323, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-14;g__CADCTB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902812475.1", "gtdb_species": "s__CADDZP01 sp902812475", "ani": 77.3215, "matched_fragments": 223, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-14;g__CADDZP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016781105.1", "gtdb_species": "s__JADDRA01 sp016781105", "ani": 77.3131, "matched_fragments": 199, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__JADDRA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_005884125.1", "gtdb_species": "s__AC-35 sp005884125", "ani": 77.1567, "matched_fragments": 210, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-35;g__AC-35", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019243975.1", "gtdb_species": "s__JAFATL01 sp019243975", "ani": 77.1065, "matched_fragments": 170, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAFATL01;g__JAFATL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005888395.1", "gtdb_species": "s__AC-25 sp005888395", "ani": 77.1004, "matched_fragments": 196, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-25;g__AC-25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005888325.1", "gtdb_species": "s__AC-14 sp005888325", "ani": 77.071, "matched_fragments": 257, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-14;g__AC-14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004366205.1", "gtdb_species": "s__SIRW01 sp004366205", "ani": 76.8647, "matched_fragments": 282, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SIRW01;g__SIRW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805555.1", "gtdb_species": "s__CADCSY01 sp902805555", "ani": 76.814, "matched_fragments": 180, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__CADCSY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005888295.1", "gtdb_species": "s__AC-9 sp005888295", "ani": 76.6698, "matched_fragments": 187, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__QHCF01;g__AC-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902805655.1", "gtdb_species": "s__CADCTF01 sp902805655", "ani": 76.6624, "matched_fragments": 187, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCTF01;g__CADCTF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016716005.1", "gtdb_species": "s__JADJXE01 sp016716005", "ani": 76.5959, "matched_fragments": 262, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JADJXE01;g__JADJXE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 76.4398, "matched_fragments": 277, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016845305.1", "gtdb_species": "s__UBA9410 sp016845305", "ani": 76.4061, "matched_fragments": 153, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016794585.1", "gtdb_species": "s__JAEUJM01 sp016794585", "ani": 76.3248, "matched_fragments": 300, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAEUJM01;g__JAEUJM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019048865.1", "gtdb_species": "s__Aquihabitans sp019048865", "ani": 76.2945, "matched_fragments": 272, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014805525.1", "gtdb_species": "s__Rhabdothermincola sediminis", "ani": 76.274, "matched_fragments": 156, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__Rhabdothermincola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016870245.1", "gtdb_species": "s__CAIUKV01 sp016870245", "ani": 76.2513, "matched_fragments": 154, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__CAIUKV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903894295.1", "gtdb_species": "s__Bog-756 sp903894295", "ani": 76.1169, "matched_fragments": 72, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_003169675.1", "gtdb_species": "s__Bog-473 sp003169675", "ani": 75.7406, "matched_fragments": 89, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-473", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003157945.1", "gtdb_species": "s__Bog-756 sp003157945", "ani": 75.5817, "matched_fragments": 89, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-756", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883965.1", "gtdb_species": "s__AC-32 sp005883965", "ani": 75.0904, "matched_fragments": 53, "total_fragments": 1268, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Gaiellales;f__Gaiellaceae;g__AC-32", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__AC-14", "g__JAHFUQ01", "s__JAHFUQ01 sp023265045" ], "_genome_taxon": [ "Acidimicrobiia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__AC-14", "g__JAHFUQ01", "s__JAHFUQ01 sp023265045", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "AC-14", "JAHFUQ01", "JAHFUQ01", "sp023265045" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }