{
    "type": "genome",
    "identifier": "GCA_023265655.1",
    "organism": "Spirochaetaceae bacterium",
    "title": "Spirochaetaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023265655.1",
        "bioproject": "PRJNA699054",
        "biosample": "SAMN19017599",
        "wgs_master": "JAHFSQ000000000.1",
        "refseq_category": "na",
        "taxid": "1898206",
        "species_taxid": "1898206",
        "organism_name": "Spirochaetaceae bacterium",
        "infraspecific_name": "",
        "isolate": "nzgw600",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/06",
        "asm_name": "ASM2326565v1",
        "submitter": "The University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/265/655/GCA_023265655.1_ASM2326565v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-06",
    "dateModified": "2022-05-06",
    "datePublished": "2022-05-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spirochaetaceae bacterium"
        ],
        "sample_taxid": [
            "1898206"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Canterbury region"
        ],
        "sample_host_location_id": [],
        "data_size": "0.709 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 62.5,
        "contamination": 2.46,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2525324",
        "Number of Sequences": "664",
        "Longest Sequences (bp)": "17992",
        "N50 (bp)": "3987",
        "Gap Ratio (%)": "0.046093",
        "GCcontent (%)": "66.6",
        "Number of CDSs": "1737",
        "Average Protein Length": "293.5",
        "Coding Ratio (%)": "60.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaeromyxobacter dehalogenans",
                "strain": "strain=2CP-1",
                "accession": "GCA_000022145.1",
                "taxid": 161493,
                "species_taxid": 161493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8221,
                "matched_fragments": 53,
                "total_fragments": 468,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polyangium spumosum",
                "strain": "strain=DSM 14734",
                "accession": "GCA_009649845.1",
                "taxid": 889282,
                "species_taxid": 889282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7939,
                "matched_fragments": 68,
                "total_fragments": 468,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.5,
            "contamination": 2.46,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002307245.1",
                "gtdb_species": "s__UBA1306 sp002307245",
                "ani": 80.2345,
                "matched_fragments": 265,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__UBA1306",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016794765.1",
                "gtdb_species": "s__JAEUJG01 sp016794765",
                "ani": 78.2927,
                "matched_fragments": 142,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__JAEUJG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018262985.1",
                "gtdb_species": "s__JAFGNN01 sp018262985",
                "ani": 77.5844,
                "matched_fragments": 114,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAFGNN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012517645.1",
                "gtdb_species": "s__JAAYUR01 sp012517645",
                "ani": 77.3371,
                "matched_fragments": 54,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAAYUR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016926955.1",
                "gtdb_species": "s__JAFGNN01 sp016926955",
                "ani": 76.9954,
                "matched_fragments": 105,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAFGNN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003247225.1",
                "gtdb_species": "s__SZUA-370 sp003247225",
                "ani": 76.9109,
                "matched_fragments": 87,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__SZUA-370",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903821875.1",
                "gtdb_species": "s__CAIJMU01 sp903821875",
                "ani": 76.79,
                "matched_fragments": 80,
                "total_fragments": 468,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__CAIJMU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.578,
        "cell_length": 0.836,
        "doubling_h": 0.838,
        "growth_tmp": 34.012,
        "optimum_tmp": 35.246,
        "optimum_ph": 8.037,
        "genome_size": 3224817.721,
        "gc_content": 49.081,
        "coding_genes": 2851.672,
        "rRNA16S_genes": 2.333,
        "tRNA_genes": 45.545,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.933,
        "range_salinity": 1.0,
        "facultative_respiration": 0.046,
        "anaerobic_respiration": 0.953,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.916,
        "thermophilic_range_tmp": 0.083,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.107,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.035,
        "spiral_cell_shape": 0.857
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Rectinemataceae",
        "g__UBA1306",
        "s__"
    ],
    "_genome_taxon": [
        "Spirochaetaceae",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Rectinemataceae",
        "g__UBA1306",
        "s__",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Rectinemataceae",
        "UBA1306",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}