{ "type": "genome", "identifier": "GCA_023334465.1", "organism": "Marinobacter sp.", "title": "Marinobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Washington", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023334465.1", "bioproject": "PRJNA540708", "biosample": "SAMN25865696", "wgs_master": "JAKRQR000000000.1", "refseq_category": "na", "taxid": "50741", "species_taxid": "50741", "organism_name": "Marinobacter sp.", "infraspecific_name": "", "isolate": "CBIW18", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/11", "asm_name": "ASM2333446v1", "submitter": "University of Washington", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/334/465/GCA_023334465.1_ASM2333446v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-11", "dateModified": "2022-05-11", "datePublished": "2022-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter sp." ], "sample_taxid": [ "50741" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Utqiagvik, AK" ], "sample_host_location_id": [], "data_size": "1.183 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4143481", "Number of Sequences": "42", "Longest Sequences (bp)": "393078", "N50 (bp)": "130109", "Gap Ratio (%)": "0.000241", "GCcontent (%)": "54.4", "Number of CDSs": "4519", "Average Protein Length": "265.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "10", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter gelidimuriae", "strain": "strain=BF04_CF-4", "accession": "GCA_000372805.1", "taxid": 2739064, "species_taxid": 2739064, "relation_to_type": "type", "validated": true, "ani": 92.5655, "matched_fragments": 767, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter psychrophilus", "strain": "strain=20041", "accession": "GCA_001043175.1", "taxid": 330734, "species_taxid": 330734, "relation_to_type": "type", "validated": true, "ani": 90.4321, "matched_fragments": 900, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter antarcticus", "strain": "strain=CGMCC 1.10835", "accession": "GCA_900142385.1", "taxid": 564117, "species_taxid": 564117, "relation_to_type": "type", "validated": true, "ani": 80.1857, "matched_fragments": 337, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter maritimus", "strain": "strain=CK47", "accession": "GCA_007671675.1", "taxid": 277961, "species_taxid": 277961, "relation_to_type": "type", "validated": true, "ani": 79.0448, "matched_fragments": 337, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinus", "strain": "strain=Hb8", "accession": "GCA_001854125.1", "taxid": 1874317, "species_taxid": 1874317, "relation_to_type": "type", "validated": true, "ani": 78.5052, "matched_fragments": 233, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter alexandrii", "strain": "strain=LZ-8", "accession": "GCA_005871205.1", "taxid": 2570351, "species_taxid": 2570351, "relation_to_type": "type", "validated": true, "ani": 78.283, "matched_fragments": 264, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.2535, "matched_fragments": 270, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter caseinilyticus", "strain": "strain=M3-13", "accession": "GCA_011074955.1", "taxid": 2692195, "species_taxid": 2692195, "relation_to_type": "type", "validated": true, "ani": 78.1333, "matched_fragments": 182, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter changyiensis", "strain": "strain=CLL7-20", "accession": "GCA_009193265.1", "taxid": 2604091, "species_taxid": 2604091, "relation_to_type": "type", "validated": true, "ani": 78.1133, "matched_fragments": 172, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.0397, "matched_fragments": 266, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 78.027, "matched_fragments": 220, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 78.0126, "matched_fragments": 225, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 77.9636, "matched_fragments": 250, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 77.8996, "matched_fragments": 254, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lipolyticus", "strain": "strain=SM19", "accession": "GCA_000397065.2", "taxid": 209639, "species_taxid": 209639, "relation_to_type": "type", "validated": true, "ani": 77.8503, "matched_fragments": 246, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 77.7752, "matched_fragments": 248, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 77.2254, "matched_fragments": 66, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 76.1852, "matched_fragments": 60, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 75.9604, "matched_fragments": 54, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372805.1", "gtdb_species": "s__Marinobacter gelidimuriae", "ani": 92.589, "matched_fragments": 766, "total_fragments": 1359, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000169375.1", "gtdb_species": "s__Marinobacter sp000169375", "ani": 92.2099, "matched_fragments": 953, "total_fragments": 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