{
    "type": "genome",
    "identifier": "GCA_023356605.1",
    "organism": "Trichodesmium sp. MAG_R02",
    "title": "Trichodesmium sp. MAG_R02",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Hebrew University of Jerusalem",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023356605.1",
        "bioproject": "PRJNA804487",
        "biosample": "SAMN25809968",
        "wgs_master": "JAKQYE000000000.1",
        "refseq_category": "na",
        "taxid": "2917418",
        "species_taxid": "2917418",
        "organism_name": "Trichodesmium sp. MAG_R02",
        "infraspecific_name": "",
        "isolate": "MAG_R02",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/12",
        "asm_name": "ASM2335660v1",
        "submitter": "Hebrew University of Jerusalem",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/356/605/GCA_023356605.1_ASM2335660v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-12",
    "dateModified": "2022-05-12",
    "datePublished": "2022-05-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Trichodesmium sp. MAG_R02"
        ],
        "sample_taxid": [
            "2917418"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Israel: Gulf of Aqaba"
        ],
        "sample_host_location_id": [],
        "data_size": "1.880 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6769329",
        "Number of Sequences": "537",
        "Longest Sequences (bp)": "93959",
        "N50 (bp)": "21165",
        "Gap Ratio (%)": "0.211247",
        "GCcontent (%)": "35.1",
        "Number of CDSs": "4365",
        "Average Protein Length": "295.5",
        "Coding Ratio (%)": "57.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Okeania hirsuta",
                "strain": "strain=PAB10Feb10-1",
                "accession": "GCA_003838195.1",
                "taxid": 1458930,
                "species_taxid": 1458930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.916,
                "matched_fragments": 1220,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stanieria cyanosphaera",
                "strain": "strain=PCC 7437",
                "accession": "GCA_000317575.1",
                "taxid": 102116,
                "species_taxid": 102116,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6398,
                "matched_fragments": 72,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_000317285.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.367,
                "matched_fragments": 61,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlorogloeopsis fritschii",
                "strain": "strain=PCC 6912",
                "accession": "GCA_003990575.1",
                "taxid": 1124,
                "species_taxid": 1124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3389,
                "matched_fragments": 64,
                "total_fragments": 1972,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000014265.1",
                "gtdb_species": "s__Trichodesmium erythraeum",
                "ani": 87.0131,
                "matched_fragments": 1526,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Trichodesmium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_010672085.1",
                "gtdb_species": "s__Trichodesmium sp010672085",
                "ani": 84.1795,
                "matched_fragments": 1442,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Trichodesmium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003838195.1",
                "gtdb_species": "s__Okeania hirsuta",
                "ani": 80.9324,
                "matched_fragments": 1213,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_014132355.1",
                "gtdb_species": "s__Okeania sp014132355",
                "ani": 80.8507,
                "matched_fragments": 1283,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672455.1",
                "gtdb_species": "s__Okeania sp010672455",
                "ani": 80.8188,
                "matched_fragments": 1310,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672525.1",
                "gtdb_species": "s__Okeania sp010672525",
                "ani": 80.787,
                "matched_fragments": 1272,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010692555.1",
                "gtdb_species": "s__Okeania sp010692555",
                "ani": 80.7699,
                "matched_fragments": 1275,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672585.1",
                "gtdb_species": "s__Okeania sp010672585",
                "ani": 80.7397,
                "matched_fragments": 1255,
                "total_fragments": 1972,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3286556.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Trichodesmium",
        "s__Trichodesmium sp023356605"
    ],
    "_genome_taxon": [
        "Trichodesmium",
        "sp.",
        "MAG_R02",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Trichodesmium",
        "s__Trichodesmium sp023356605",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcoleaceae",
        "Trichodesmium",
        "Trichodesmium",
        "sp023356605"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}