{ "type": "genome", "identifier": "GCA_023382095.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023382095.1", "bioproject": "PRJNA666095", "biosample": "SAMN27868097", "wgs_master": "JAMCQJ000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "FK_Sedi_A_Bin.49", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2338209v1", "submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/382/095/GCA_023382095.1_ASM2338209v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong" ], "sample_host_location_id": [], "data_size": "0.823 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2911241", "Number of Sequences": "176", "Longest Sequences (bp)": "121148", "N50 (bp)": "33008", "Gap Ratio (%)": "0.014358", "GCcontent (%)": "59.2", "Number of CDSs": "2712", "Average Protein Length": "298.3", "Coding Ratio (%)": "83.4", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfuricella denitrificans", "strain": "strain=skB26", "accession": "GCA_000297055.2", "taxid": 649841, "species_taxid": 649841, "relation_to_type": "type", "validated": true, "ani": 81.1827, "matched_fragments": 462, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 79.4698, "matched_fragments": 329, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 78.3036, "matched_fragments": 199, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 78.2321, "matched_fragments": 196, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 78.213, "matched_fragments": 208, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 78.183, "matched_fragments": 187, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=NBRC 107929", "accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.9704, "matched_fragments": 187, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula multivorans", "strain": "strain=TTN", "accession": "GCA_003851125.1", "taxid": 1559896, "species_taxid": 1559896, "relation_to_type": "type", "validated": true, "ani": 77.8449, "matched_fragments": 164, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 77.8309, "matched_fragments": 202, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 77.7439, "matched_fragments": 189, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.7943, "matched_fragments": 118, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 76.7774, "matched_fragments": 100, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rivicola pingtungensis", "strain": "strain=DSM 29661", "accession": "GCA_003201855.1", "taxid": 1054498, "species_taxid": 1054498, "relation_to_type": "type", "validated": true, "ani": 76.6778, "matched_fragments": 124, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6362, "matched_fragments": 114, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 76.4767, "matched_fragments": 114, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacillus flagellatus", "strain": "strain=KT", "accession": "GCA_000013705.1", "taxid": 405, "species_taxid": 405, "relation_to_type": "type", "validated": true, "ani": 76.42, "matched_fragments": 64, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_003119195.2", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 75.4249, "matched_fragments": 77, "total_fragments": 887, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002784065.1", "gtdb_species": "s__Sulfuricella sp002784065", "ani": 82.3392, "matched_fragments": 400, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfuricella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000971475.1", "gtdb_species": "s__Sulfuricella sp000971475", "ani": 82.0487, "matched_fragments": 517, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfuricella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000297055.2", "gtdb_species": "s__Sulfuricella denitrificans", "ani": 81.1975, "matched_fragments": 461, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfuricella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018823025.1", "gtdb_species": "s__Sulfuricella sp018823025", "ani": 81.1302, "matched_fragments": 454, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfuricella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011764585.1", "gtdb_species": "s__Sulfurimicrobium lacus", "ani": 79.4693, "matched_fragments": 329, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfurimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003104895.1", "gtdb_species": "s__Sulfurimicrobium sp003104895", "ani": 79.098, "matched_fragments": 278, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuricellaceae;g__Sulfurimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009938015.1", "gtdb_species": "s__Sulfuriferula plumbiphila", "ani": 78.2611, "matched_fragments": 187, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Sulfuriferulaceae;g__Sulfuriferula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002327405.1", "gtdb_species": "s__UBA6918 sp002327405", "ani": 77.1165, "matched_fragments": 141, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__UBA6918", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018781585.1", "gtdb_species": "s__RBG-16-58-11 sp018781585", "ani": 76.687, "matched_fragments": 113, "total_fragments": 887, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__RBG-16-58-11;g__RBG-16-58-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Sulfuricellaceae", "g__Sulfuricella", "s__Sulfuricella sp021801705" ], "_genome_taxon": [ "Gammaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Sulfuricellaceae", "g__Sulfuricella", "s__Sulfuricella sp021801705", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Sulfuricellaceae", "Sulfuricella", "Sulfuricella", "sp021801705" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }