{
    "type": "genome",
    "identifier": "GCA_023382855.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023382855.1",
        "bioproject": "PRJNA715587",
        "biosample": "SAMN18354512",
        "wgs_master": "JAHDWU000000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "FEN1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/16",
        "asm_name": "ASM2338285v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/382/855/GCA_023382855.1_ASM2338285v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-16",
    "dateModified": "2022-05-16",
    "datePublished": "2022-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Hong Kong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.035 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 57.28,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3689693",
        "Number of Sequences": "914",
        "Longest Sequences (bp)": "20502",
        "N50 (bp)": "4643",
        "Gap Ratio (%)": "0.074234",
        "GCcontent (%)": "65.3",
        "Number of CDSs": "2366",
        "Average Protein Length": "315.1",
        "Coding Ratio (%)": "60.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Phreatobacter cathodiphilus",
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                "accession": "GCA_003008515.1",
                "taxid": 1868589,
                "species_taxid": 1868589,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 53,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stella humosa",
                "strain": "strain=ATCC 43930",
                "accession": "GCA_006738645.1",
                "taxid": 94,
                "species_taxid": 94,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0389,
                "matched_fragments": 55,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris tepida",
                "strain": "strain=GI",
                "accession": "GCA_003966715.1",
                "taxid": 2233851,
                "species_taxid": 2233851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0241,
                "matched_fragments": 50,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stella humosa",
                "strain": "strain=DSM 5900",
                "accession": "GCA_003751345.1",
                "taxid": 94,
                "species_taxid": 94,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9933,
                "matched_fragments": 55,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas huabeiensis",
                "strain": "strain=HB2",
                "accession": "GCA_000559025.1",
                "taxid": 1244513,
                "species_taxid": 1244513,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7908,
                "matched_fragments": 69,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7712,
                "matched_fragments": 125,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura citrea",
                "strain": "strain=DSM 43461",
                "accession": "GCA_013409045.1",
                "taxid": 46158,
                "species_taxid": 46158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.554,
                "matched_fragments": 65,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 57.28,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003170555.1",
                "gtdb_species": "s__FEN-1099 sp003170555",
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                "matched_fragments": 62,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__FEN-1099;c__FEN-1099;o__FEN-1099;f__FEN-1099;g__FEN-1099",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012517325.1",
                "gtdb_species": "s__JAAYVF01 sp012517325",
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                "matched_fragments": 77,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__FEN-1099;c__FEN-1099;o__FEN-1099;f__FEN-1099;g__JAAYVF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744955.1",
                "gtdb_species": "s__Dokdonella_A sp017744955",
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                "matched_fragments": 66,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016177705.1",
                "gtdb_species": "s__JACOUT01 sp016177705",
                "ani": 74.953,
                "matched_fragments": 86,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA727;o__UBA727;f__VGSZ01;g__JACOUT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016874845.1",
                "gtdb_species": "s__VGSZ01 sp016874845",
                "ani": 74.9036,
                "matched_fragments": 69,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__UBA727;o__UBA727;f__VGSZ01;g__VGSZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014529705.1",
                "gtdb_species": "s__Bradyrhizobium campsiandrae",
                "ani": 74.891,
                "matched_fragments": 50,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Lernaellota",
        "c__Lernaellaia",
        "o__JACKCT01",
        "f__JACKCT01",
        "g__JADLEX01",
        "s__"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Lernaellota",
        "c__Lernaellaia",
        "o__JACKCT01",
        "f__JACKCT01",
        "g__JADLEX01",
        "s__",
        "Bacteria",
        "Lernaellota",
        "Lernaellaia",
        "JACKCT01",
        "JACKCT01",
        "JADLEX01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}