{ "type": "genome", "identifier": "GCA_023387085.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023387085.1", "bioproject": "PRJNA682348", "biosample": "SAMN17039740", "wgs_master": "JAEWIL000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_PBrB_107", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2338708v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/387/085/GCA_023387085.1_ASM2338708v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Braganca" ], "sample_host_location_id": [], "data_size": "1.134 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4094034", "Number of Sequences": "264", "Longest Sequences (bp)": "91772", "N50 (bp)": "21619", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "3680", "Average Protein Length": "315.6", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis lindanitolerans", "strain": "strain=WS5A3p", "accession": "GCA_002993885.1", "taxid": 2054227, "species_taxid": 2054227, "relation_to_type": "type", "validated": true, "ani": 85.2754, "matched_fragments": 786, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis soli", "strain": "strain=BL03", "accession": "GCA_018682675.1", "taxid": 592051, "species_taxid": 592051, "relation_to_type": "type", "validated": true, "ani": 84.937, "matched_fragments": 752, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 84.3867, "matched_fragments": 773, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis macrogoltabida", "strain": "strain=203", "accession": "GCA_001314325.1", "taxid": 33050, "species_taxid": 33050, "relation_to_type": "type", "validated": true, "ani": 84.0697, "matched_fragments": 821, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis panaciterrae", "strain": "strain=DSM 27164", "accession": "GCA_011762125.1", "taxid": 363841, "species_taxid": 363841, "relation_to_type": "type", "validated": true, "ani": 83.8542, "matched_fragments": 810, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis fribergensis", "strain": "strain=Kp5.2", "accession": "GCA_000803645.1", "taxid": 1515612, "species_taxid": 1515612, "relation_to_type": "type", "validated": true, "ani": 83.717, "matched_fragments": 794, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": "GCA_000013985.1", "taxid": 117207, "species_taxid": 117207, "relation_to_type": "type", "validated": true, "ani": 83.6787, "matched_fragments": 690, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": "strain=NBRC 15098", "accession": "GCA_001598815.1", "taxid": 2448440, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.5614, "matched_fragments": 719, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis indica", "strain": "strain=DS15", "accession": "GCA_900188185.1", "taxid": 436663, "species_taxid": 436663, "relation_to_type": "type", "validated": true, "ani": 83.5192, "matched_fragments": 709, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis granuli", "strain": "strain=NBRC 100800", "accession": "GCA_001591045.1", "taxid": 267128, "species_taxid": 267128, "relation_to_type": "type", "validated": true, "ani": 83.5041, "matched_fragments": 670, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis microcysteis", "strain": "strain=Z10-6", "accession": "GCA_012274265.1", "taxid": 2484145, "species_taxid": 2484145, "relation_to_type": "type", "validated": true, "ani": 83.4128, "matched_fragments": 714, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.4094, "matched_fragments": 724, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=UI2", "accession": "GCA_900177755.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 83.4039, "matched_fragments": 732, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis solisilvae", "strain": "strain=R366", "accession": "GCA_015475875.1", "taxid": 1886788, "species_taxid": 1886788, "relation_to_type": "type", "validated": true, "ani": 83.1098, "matched_fragments": 674, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 77.7428, "matched_fragments": 350, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 77.4894, "matched_fragments": 234, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 77.3784, "matched_fragments": 196, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.3707, "matched_fragments": 196, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 77.3496, "matched_fragments": 221, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002993885.1", "gtdb_species": "s__Sphingopyxis lindanitolerans", "ani": 85.25, "matched_fragments": 788, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingopyxis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018682675.1", "gtdb_species": "s__Sphingopyxis soli", "ani": 84.9591, 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