{ "type": "genome", "identifier": "GCA_023387635.1", "organism": "Bacillota bacterium", "title": "Bacillota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023387635.1", "bioproject": "PRJNA682348", "biosample": "SAMN17039723", "wgs_master": "JAEWHU000000000.1", "refseq_category": "na", "taxid": "1879010", "species_taxid": "1879010", "organism_name": "Bacillota bacterium", "infraspecific_name": "", "isolate": "OH_PBlB_79", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2338763v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/387/635/GCA_023387635.1_ASM2338763v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillota bacterium" ], "sample_taxid": [ "1879010" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Blumenau" ], "sample_host_location_id": [], "data_size": "1.156 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.86, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4129037", "Number of Sequences": "394", "Longest Sequences (bp)": "74597", "N50 (bp)": "14534", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.8", "Number of CDSs": "3380", "Average Protein Length": "314.1", "Coding Ratio (%)": "77.1", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerocolumna sedimenticola", "strain": "strain=CBA3638", "accession": "GCA_009931695.1", "taxid": 2696063, "species_taxid": 2696063, "relation_to_type": "type", "validated": true, "ani": 77.4373, "matched_fragments": 154, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium phytofermentans", "strain": "strain=ISDg", "accession": "GCA_000018685.1", "taxid": 66219, "species_taxid": 66219, "relation_to_type": "type", "validated": true, "ani": 77.2891, "matched_fragments": 102, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna cellulosilytica", "strain": "strain=SN021", "accession": "GCA_014218335.1", "taxid": 433286, "species_taxid": 433286, "relation_to_type": "type", "validated": true, "ani": 77.2083, "matched_fragments": 134, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna cellulosilytica", "strain": "strain=DSM 100423", "accession": "GCA_014202875.1", "taxid": 433286, "species_taxid": 433286, "relation_to_type": "type", "validated": true, "ani": 77.1566, "matched_fragments": 130, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosporobacter mobilis", "strain": "strain=DSM 15930", "accession": "GCA_900142955.1", "taxid": 264463, "species_taxid": 264463, "relation_to_type": "type", "validated": true, "ani": 77.0085, "matched_fragments": 101, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobilisporobacter senegalensis", "strain": "strain=DSM 26537", "accession": "GCA_003752155.1", "taxid": 1329262, "species_taxid": 1329262, "relation_to_type": "type", "validated": true, "ani": 76.9649, "matched_fragments": 129, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna aminovalerica", "strain": "strain=DSM 1283", "accession": "GCA_900115365.1", "taxid": 1527, "species_taxid": 1527, "relation_to_type": "type", "validated": true, "ani": 76.9452, "matched_fragments": 161, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] polysaccharolyticum", "strain": "strain=DSM 1801", "accession": "GCA_900111595.1", "taxid": 29364, "species_taxid": 29364, "relation_to_type": "type", "validated": true, "ani": 76.748, "matched_fragments": 60, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerocolumna chitinilytica", "strain": "strain=CTTW", "accession": "GCA_014218355.1", "taxid": 1727145, "species_taxid": 1727145, "relation_to_type": "type", "validated": true, "ani": 76.6759, "matched_fragments": 90, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosporobacter faecicola", "strain": "strain=KCTC 15857", "accession": "GCA_012070565.1", "taxid": 2718714, "species_taxid": 2718714, "relation_to_type": "type", "validated": true, "ani": 76.6249, "matched_fragments": 89, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerosacchariphilus polymeriproducens", "strain": "strain=MCWD5", "accession": "GCA_003363435.1", "taxid": 1812858, "species_taxid": 1812858, "relation_to_type": "type", "validated": true, "ani": 76.1542, "matched_fragments": 60, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] fimetarium", "strain": "strain=DSM 9179", "accession": "GCA_900111235.1", "taxid": 99656, "species_taxid": 99656, "relation_to_type": "type", "validated": true, "ani": 75.4878, "matched_fragments": 58, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.86, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900078195.1", "gtdb_species": "s__Lachnoclostridium sp900078195", "ani": 77.938, "matched_fragments": 175, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009931695.1", "gtdb_species": "s__Anaerocolumna sedimenticola", "ani": 77.4185, "matched_fragments": 155, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerocolumna", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000018685.1", "gtdb_species": "s__Lachnoclostridium phytofermentans", "ani": 77.2611, "matched_fragments": 103, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014218335.1", "gtdb_species": "s__Anaerocolumna cellulosilytica", "ani": 77.1888, "matched_fragments": 135, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerocolumna", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016591975.1", "gtdb_species": "s__TB5 sp016591975", "ani": 77.1684, "matched_fragments": 133, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__TB5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142955.1", "gtdb_species": "s__Anaerosporobacter mobilis", "ani": 77.0079, "matched_fragments": 101, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003752155.1", "gtdb_species": "s__Mobilisporobacter senegalensis", "ani": 76.9453, "matched_fragments": 130, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mobilisporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115365.1", "gtdb_species": "s__Anaerocolumna aminovalerica", "ani": 76.9452, "matched_fragments": 161, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerocolumna", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009731425.1", "gtdb_species": "s__KM106-2 sp009731425", "ani": 76.7454, "matched_fragments": 82, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__KM106-2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014218355.1", "gtdb_species": "s__Anaerocolumna sp014218355", "ani": 76.6759, "matched_fragments": 90, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerocolumna", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018372435.1", "gtdb_species": "s__Anaerosporobacter sp018372435", "ani": 76.6613, "matched_fragments": 115, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.04", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905192625.1", "gtdb_species": "s__Lachnoclostridium sp905192625", "ani": 76.6194, "matched_fragments": 59, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003526525.1", "gtdb_species": "s__Lachnoclostridium sp003526525", "ani": 76.4697, "matched_fragments": 92, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnoclostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015057455.1", "gtdb_species": "s__SIG301 sp015057455", "ani": 76.1509, "matched_fragments": 65, "total_fragments": 1185, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__SIG301", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerocolumna", "s__Anaerocolumna sp023387635" ], "_genome_taxon": [ "Bacillota", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerocolumna", "s__Anaerocolumna sp023387635", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Anaerocolumna", "Anaerocolumna", "sp023387635" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }