{ "type": "genome", "identifier": "GCA_023397245.1", "organism": "Bacillota bacterium", "title": "Bacillota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023397245.1", "bioproject": "PRJNA682348", "biosample": "SAMN17043770", "wgs_master": "JAEWUH000000000.1", "refseq_category": "na", "taxid": "1879010", "species_taxid": "1879010", "organism_name": "Bacillota bacterium", "infraspecific_name": "", "isolate": "OH_SDB_177", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2339724v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/397/245/GCA_023397245.1_ASM2339724v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillota bacterium" ], "sample_taxid": [ "1879010" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Dourados" ], "sample_host_location_id": [], "data_size": "0.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3148089", "Number of Sequences": "281", "Longest Sequences (bp)": "44050", "N50 (bp)": "15062", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.6", "Number of CDSs": "2728", "Average Protein Length": "298.9", "Coding Ratio (%)": "77.7", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caproiciproducens galactitolivorans", "strain": "strain=BS-1", "accession": "GCA_004768785.1", "taxid": 642589, "species_taxid": 642589, "relation_to_type": "type", "validated": true, "ani": 77.2695, "matched_fragments": 169, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caproicibacter fermentans", "strain": "strain=EA1", "accession": "GCA_009746625.1", "taxid": 2576756, "species_taxid": 2576756, "relation_to_type": "type", "validated": true, "ani": 76.955, "matched_fragments": 130, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromassilibacillus senegalensis", "strain": "strain=mt9", "accession": "GCA_001261775.1", "taxid": 1673717, "species_taxid": 1673717, "relation_to_type": "type", "validated": true, "ani": 76.8989, "matched_fragments": 113, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium jeddahense", "strain": "strain=JCD", "accession": "GCA_000577335.1", "taxid": 1414721, "species_taxid": 1414721, "relation_to_type": "type", "validated": true, "ani": 76.4181, "matched_fragments": 95, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogeniiclostridium mannosilyticum", "strain": "strain=ASD2818", "accession": "GCA_003268275.1", "taxid": 2764322, "species_taxid": 2764322, "relation_to_type": "type", "validated": true, "ani": 76.3029, "matched_fragments": 57, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caproicibacterium amylolyticum", "strain": "strain=LBM18003", "accession": "GCA_014467055.1", "taxid": 2766537, "species_taxid": 2766537, "relation_to_type": "type", "validated": true, "ani": 75.8098, "matched_fragments": 58, "total_fragments": 906, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000752215.1", "gtdb_species": "s__Caproiciproducens sp000752215", "ani": 78.4125, "matched_fragments": 254, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900546895.1", "gtdb_species": "s__Caproiciproducens sp900546895", "ani": 77.9686, "matched_fragments": 198, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002359465.1", "gtdb_species": "s__Caproiciproducens sp002359465", "ani": 77.95, "matched_fragments": 208, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012517675.1", "gtdb_species": "s__Caproiciproducens sp012517675", "ani": 77.9446, "matched_fragments": 182, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002378845.1", "gtdb_species": "s__Caproiciproducens sp002378845", "ani": 77.9263, "matched_fragments": 218, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012839345.1", "gtdb_species": "s__Caproiciproducens sp012839345", "ani": 77.5194, "matched_fragments": 157, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004768785.1", "gtdb_species": "s__Caproiciproducens galactitolivorans", "ani": 77.2695, "matched_fragments": 169, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012516295.1", "gtdb_species": "s__Caproiciproducens sp012516295", "ani": 77.2453, "matched_fragments": 115, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001261775.1", "gtdb_species": "s__Anaeromassilibacillus senegalensis", "ani": 76.8989, "matched_fragments": 113, "total_fragments": 906, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Anaeromassilibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Acutalibacteraceae", "g__Caproiciproducens", "s__Caproiciproducens sp023397245" ], "_genome_taxon": [ "Bacillota", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Acutalibacteraceae", "g__Caproiciproducens", "s__Caproiciproducens sp023397245", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Acutalibacteraceae", "Caproiciproducens", "Caproiciproducens", "sp023397245" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }