{ "type": "genome", "identifier": "GCA_023407255.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023407255.1", "bioproject": "PRJNA682348", "biosample": "SAMN17045931", "wgs_master": "JAEYMT000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "OH_HFB_82", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2340725v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/407/255/GCA_023407255.1_ASM2340725v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Fortaleza" ], "sample_host_location_id": [], "data_size": "0.890 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3287135", "Number of Sequences": "224", "Longest Sequences (bp)": "75719", "N50 (bp)": "22065", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "3028", "Average Protein Length": "311.4", "Coding Ratio (%)": "86.1", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium paraoxydans", "strain": "strain=DSM 15019", "accession": "GCA_900105335.1", "taxid": 199592, "species_taxid": 199592, "relation_to_type": "suspected-type", "validated": true, "ani": 95.0924, "matched_fragments": 891, "total_fragments": 981, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbacterium paraoxydans", "strain": "strain=NBRC 103076", "accession": "GCA_001552495.1", "taxid": 199592, "species_taxid": 199592, "relation_to_type": "suspected-type", "validated": true, "ani": 94.9461, "matched_fragments": 791, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium algeriense", "strain": "strain=G1", "accession": "GCA_008868005.1", "taxid": 2615184, "species_taxid": 2615184, "relation_to_type": "type", "validated": true, "ani": 84.7908, "matched_fragments": 762, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oxydans", "strain": "strain=DSM 20578", "accession": "GCA_008868025.1", "taxid": 82380, "species_taxid": 82380, "relation_to_type": "suspected-type", "validated": true, "ani": 83.9588, "matched_fragments": 769, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oxydans", "strain": "strain=NBRC 15586", "accession": "GCA_006540085.1", "taxid": 82380, "species_taxid": 82380, "relation_to_type": "suspected-type", "validated": true, "ani": 83.9203, "matched_fragments": 764, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium liquefaciens", "strain": "strain=NBRC 15037", "accession": "GCA_006539765.1", "taxid": 33918, "species_taxid": 33918, "relation_to_type": "type", "validated": true, "ani": 83.5259, "matched_fragments": 661, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium liquefaciens", "strain": "strain=JCM 3879", "accession": "GCA_014648755.1", "taxid": 33918, "species_taxid": 33918, "relation_to_type": "type", "validated": true, "ani": 83.4991, "matched_fragments": 665, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hydrocarbonoxydans", "strain": "strain=DSM 16089", "accession": "GCA_900105205.1", "taxid": 273678, "species_taxid": 273678, "relation_to_type": "suspected-type", "validated": true, "ani": 82.6243, "matched_fragments": 643, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium phyllosphaerae", "strain": "strain=DSM 13468", "accession": "GCA_017876435.1", "taxid": 124798, "species_taxid": 124798, "relation_to_type": "type", "validated": true, "ani": 82.5538, "matched_fragments": 630, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hydrocarbonoxydans", "strain": "strain=NBRC 103074", "accession": "GCA_001552455.1", "taxid": 273678, "species_taxid": 273678, "relation_to_type": "suspected-type", "validated": true, "ani": 82.5499, "matched_fragments": 631, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium bovistercoris", "strain": "strain=NEAU-LLE", "accession": "GCA_003387575.1", "taxid": 2293570, "species_taxid": 2293570, "relation_to_type": "type", "validated": true, "ani": 81.1837, "matched_fragments": 525, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium commune", "strain": "strain=Re1", "accession": "GCA_014836945.1", "taxid": 2762219, "species_taxid": 2762219, "relation_to_type": "type", "validated": true, "ani": 81.1799, "matched_fragments": 500, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 80.0093, "matched_fragments": 406, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oryzae", "strain": "strain=MB-10", "accession": "GCA_009735645.1", "taxid": 743009, "species_taxid": 743009, "relation_to_type": "type", "validated": true, "ani": 79.9591, "matched_fragments": 383, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 79.5938, "matched_fragments": 424, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001866135.1", "gtdb_species": "s__Microbacterium sp001866135", "ani": 99.1404, "matched_fragments": 929, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.261, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900105335.1", "gtdb_species": "s__Microbacterium paraoxydans", "ani": 95.0924, "matched_fragments": 891, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.3631, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_019056515.1", "gtdb_species": "s__Microbacterium sp001595495", "ani": 94.585, "matched_fragments": 873, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.3631, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_904066215.1", "gtdb_species": "s__Microbacterium sp002456035", "ani": 92.9937, "matched_fragments": 900, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.64", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002848265.1", "gtdb_species": "s__Microbacterium sp002848265", "ani": 91.6795, "matched_fragments": 855, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017939615.1", "gtdb_species": "s__Microbacterium sp017939615", "ani": 89.9886, "matched_fragments": 809, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008271365.1", "gtdb_species": "s__Microbacterium sp008271365", "ani": 89.6726, "matched_fragments": 844, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Microbacterium", "s__Microbacterium sp001866135" ], "_genome_taxon": [ "Actinomycetia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Microbacteriaceae", "g__Microbacterium", "s__Microbacterium sp001866135", "Bacteria", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Microbacteriaceae", "Microbacterium", "Microbacterium", "sp001866135" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }