{
    "type": "genome",
    "identifier": "GCA_023413035.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023413035.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17033176",
        "wgs_master": "JAEZQP000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_CFB_99",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2341303v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/413/035/GCA_023413035.1_ASM2341303v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Bos taurus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Fortaleza"
        ],
        "sample_host_location_id": [],
        "data_size": "0.680 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 88.35,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2462349",
        "Number of Sequences": "535",
        "Longest Sequences (bp)": "15225",
        "N50 (bp)": "4731",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.2",
        "Number of CDSs": "1912",
        "Average Protein Length": "286.5",
        "Coding Ratio (%)": "66.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Magnetospirillum aberrantis",
                "strain": "strain=SpK",
                "accession": "GCA_011022235.1",
                "taxid": 1105283,
                "species_taxid": 1105283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4768,
                "matched_fragments": 440,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4729,
                "matched_fragments": 345,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum gryphiswaldense",
                "strain": "strain=MSR-1",
                "accession": "GCA_002995515.1",
                "taxid": 55518,
                "species_taxid": 55518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3658,
                "matched_fragments": 370,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum gryphiswaldense",
                "strain": "strain=MSR-1",
                "accession": "GCA_000513295.1",
                "taxid": 55518,
                "species_taxid": 55518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3175,
                "matched_fragments": 368,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum caucaseum",
                "strain": "strain=SO-1",
                "accession": "GCA_000342045.1",
                "taxid": 1244869,
                "species_taxid": 1244869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6798,
                "matched_fragments": 355,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum marisnigri",
                "strain": "strain=SP-1",
                "accession": "GCA_001650715.1",
                "taxid": 1285242,
                "species_taxid": 1285242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2551,
                "matched_fragments": 337,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum kuznetsovii",
                "strain": "strain=LBB-42",
                "accession": "GCA_003284725.1",
                "taxid": 2053833,
                "species_taxid": 2053833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.149,
                "matched_fragments": 297,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum magnetotacticum",
                "strain": "strain=MS-1",
                "accession": "GCA_000829825.1",
                "taxid": 188,
                "species_taxid": 188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9466,
                "matched_fragments": 291,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter cavernae",
                "strain": "strain=K1W11S-77",
                "accession": "GCA_003355495.1",
                "taxid": 2290923,
                "species_taxid": 2290923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4271,
                "matched_fragments": 50,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvimonas soli",
                "strain": "strain=LMG 19981",
                "accession": "GCA_006352285.1",
                "taxid": 155197,
                "species_taxid": 155197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0749,
                "matched_fragments": 92,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Croceicoccus sediminis",
                "strain": "strain=S2-4-2",
                "accession": "GCA_007570835.1",
                "taxid": 2571150,
                "species_taxid": 2571150,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0446,
                "matched_fragments": 50,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 88.35,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_011022235.1",
                "gtdb_species": "s__Magnetospirillum aberrantis",
                "ani": 84.4768,
                "matched_fragments": 440,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014380005.1",
                "gtdb_species": "s__Magnetospirillum sp014380005",
                "ani": 82.6507,
                "matched_fragments": 389,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902729435.1",
                "gtdb_species": "s__Magnetospirillum sp902729435",
                "ani": 82.3694,
                "matched_fragments": 378,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001898825.1",
                "gtdb_species": "s__Magnetospirillum sp001898825",
                "ani": 81.6581,
                "matched_fragments": 366,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.98",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014379805.1",
                "gtdb_species": "s__Magnetospirillum sp014379805",
                "ani": 81.3372,
                "matched_fragments": 322,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000513295.1",
                "gtdb_species": "s__Magnetospirillum gryphiswaldense",
                "ani": 81.2621,
                "matched_fragments": 371,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001511835.1",
                "gtdb_species": "s__Phaeospirillum sp001511835",
                "ani": 80.9828,
                "matched_fragments": 350,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002435715.1",
                "gtdb_species": "s__Magnetospirillum sp002435715",
                "ani": 80.8196,
                "matched_fragments": 337,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900184795.1",
                "gtdb_species": "s__Phaeospirillum sp900184795",
                "ani": 80.7776,
                "matched_fragments": 352,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000342045.1",
                "gtdb_species": "s__Phaeospirillum caucaseum",
                "ani": 80.7125,
                "matched_fragments": 352,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018224925.1",
                "gtdb_species": "s__Magnetospirillum sp018224925",
                "ani": 80.0867,
                "matched_fragments": 320,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016212565.1",
                "gtdb_species": "s__JACRFY01 sp016212565",
                "ani": 79.7997,
                "matched_fragments": 316,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JACRFY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015232025.1",
                "gtdb_species": "s__JADFZP01 sp015232025",
                "ani": 78.2396,
                "matched_fragments": 187,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JADFZP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales",
        "f__Magnetospirillaceae",
        "g__Magnetospirillum",
        "s__Magnetospirillum sp023426365"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales",
        "f__Magnetospirillaceae",
        "g__Magnetospirillum",
        "s__Magnetospirillum sp023426365",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodospirillales",
        "Magnetospirillaceae",
        "Magnetospirillum",
        "Magnetospirillum",
        "sp023426365"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}