{ "type": "genome", "identifier": "GCA_023415525.1", "organism": "Bacillota bacterium", "title": "Bacillota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023415525.1", "bioproject": "PRJNA682348", "biosample": "SAMN17033013", "wgs_master": "JAEZKI000000000.1", "refseq_category": "na", "taxid": "1879010", "species_taxid": "1879010", "organism_name": "Bacillota bacterium", "infraspecific_name": "", "isolate": "OH_CDB_270", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2341552v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/415/525/GCA_023415525.1_ASM2341552v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillota bacterium" ], "sample_taxid": [ "1879010" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Dourados" ], "sample_host_location_id": [], "data_size": "0.784 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.66, "contamination": 4.69, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2755759", "Number of Sequences": "554", "Longest Sequences (bp)": "15244", "N50 (bp)": "5317", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "2098", "Average Protein Length": "281.9", "Coding Ratio (%)": "64.4", "Number of rRNAs": "4", "Number of tRNAs": "24", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulosilyticum lentocellum", "strain": "strain=DSM 5427", "accession": "GCA_000178835.2", "taxid": 29360, "species_taxid": 29360, "relation_to_type": "type", "validated": true, "ani": 78.2621, "matched_fragments": 122, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosilyticum ruminicola", "strain": "strain=JCM 14822", "accession": "GCA_001311925.1", "taxid": 425254, "species_taxid": 425254, "relation_to_type": "type", "validated": true, "ani": 77.6311, "matched_fragments": 79, "total_fragments": 650, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.66, "contamination": 4.69, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002735925.1", "gtdb_species": "s__Cellulosilyticum sp002735925", "ani": 79.9793, "matched_fragments": 277, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000178835.2", "gtdb_species": "s__Cellulosilyticum lentocellum", "ani": 78.2621, "matched_fragments": 122, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.43", "min_intra_species_ani": "97.43", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018883705.1", "gtdb_species": "s__Cellulosilyticum pullistercoris", "ani": 77.6167, "matched_fragments": 62, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015058045.1", "gtdb_species": "s__Cellulosilyticum sp015058045", "ani": 77.2563, "matched_fragments": 96, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__Cellulosilyticum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900095725.1", "gtdb_species": "s__FMMP01 sp900095725", "ani": 76.994, "matched_fragments": 86, "total_fragments": 650, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Cellulosilyticaceae;g__FMMP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Cellulosilyticaceae", "g__Sporanaerobium", "s__Sporanaerobium sp023415525" ], "_genome_taxon": [ "Bacillota", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Cellulosilyticaceae", "g__Sporanaerobium", "s__Sporanaerobium sp023415525", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Cellulosilyticaceae", "Sporanaerobium", "Sporanaerobium", "sp023415525" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }