{ "type": "genome", "identifier": "GCA_023417695.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023417695.1", "bioproject": "PRJNA682348", "biosample": "SAMN17032871", "wgs_master": "JAEZEW000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_CBrB_362", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2341769v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/417/695/GCA_023417695.1_ASM2341769v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Braganca" ], "sample_host_location_id": [], "data_size": "0.847 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.13, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3026311", "Number of Sequences": "404", "Longest Sequences (bp)": "104385", "N50 (bp)": "9238", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "2686", "Average Protein Length": "290.2", "Coding Ratio (%)": "77.3", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Devosia sediminis", "strain": "strain=MSA67", "accession": "GCA_016411825.1", "taxid": 2798801, "species_taxid": 2798801, "relation_to_type": "type", "validated": true, "ani": 79.6689, "matched_fragments": 375, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia salina", "strain": "strain=SCS-3", "accession": "GCA_019504385.1", "taxid": 2860336, "species_taxid": 2860336, "relation_to_type": "type", "validated": true, "ani": 79.5478, "matched_fragments": 390, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia elaeis", "strain": "strain=S37", "accession": "GCA_001650025.1", "taxid": 1770058, "species_taxid": 1770058, "relation_to_type": "type", "validated": true, "ani": 79.5145, "matched_fragments": 379, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia oryziradicis", "strain": "strain=G19", "accession": "GCA_016698645.1", "taxid": 2801335, "species_taxid": 2801335, "relation_to_type": "type", "validated": true, "ani": 79.4827, "matched_fragments": 390, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia lucknowensis", "strain": "strain=L15", "accession": "GCA_900177655.1", "taxid": 1096929, "species_taxid": 1096929, "relation_to_type": "type", "validated": true, "ani": 79.2588, "matched_fragments": 352, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia chinhatensis", "strain": "strain=IPL18", "accession": "GCA_000969445.1", "taxid": 429727, "species_taxid": 429727, "relation_to_type": "type", "validated": true, "ani": 78.9789, "matched_fragments": 318, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia equisanguinis", "strain": "strain=CIP 111628", "accession": "GCA_900631955.1", "taxid": 2490941, "species_taxid": 2490941, "relation_to_type": "type", "validated": true, "ani": 78.95, "matched_fragments": 353, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia faecipullorum", "strain": "strain=CC-YST696", "accession": "GCA_015158295.1", "taxid": 2755039, "species_taxid": 2755039, "relation_to_type": "type", "validated": true, "ani": 78.8917, "matched_fragments": 299, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia riboflavina", "strain": "strain=IFO13584", "accession": "GCA_000743575.1", "taxid": 46914, "species_taxid": 46914, "relation_to_type": "type", "validated": true, "ani": 78.8294, "matched_fragments": 350, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia naphthalenivorans", "strain": "strain=CM5-1", "accession": "GCA_003056355.1", "taxid": 2082392, "species_taxid": 2082392, "relation_to_type": "type", "validated": true, "ani": 78.5093, "matched_fragments": 356, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.13, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018828145.1", "gtdb_species": "s__Devosia sp018828145", "ani": 79.7304, "matched_fragments": 403, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016411825.1", "gtdb_species": "s__Devosia sp016411825", "ani": 79.6703, "matched_fragments": 375, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001650025.1", "gtdb_species": "s__Devosia elaeis", "ani": 79.515, "matched_fragments": 379, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016698645.1", "gtdb_species": "s__Devosia sp016698645", "ani": 79.4887, "matched_fragments": 389, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177655.1", "gtdb_species": "s__Devosia lucknowensis", "ani": 79.2934, "matched_fragments": 349, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014837245.1", "gtdb_species": "s__Devosia sp014837245", "ani": 79.1552, "matched_fragments": 341, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015234425.1", "gtdb_species": "s__Devosia sp015234425", "ani": 79.0185, "matched_fragments": 367, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000969445.1", "gtdb_species": "s__Devosia chinhatensis", "ani": 78.9926, "matched_fragments": 317, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900631955.1", "gtdb_species": "s__Devosia sp001899045", "ani": 78.9746, "matched_fragments": 351, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000743575.1", "gtdb_species": "s__Devosia riboflavina", "ani": 78.8418, "matched_fragments": 349, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017744655.1", "gtdb_species": "s__Devosia sp017744655", "ani": 78.7694, "matched_fragments": 342, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003056355.1", "gtdb_species": "s__Devosia naphthalenivorans", "ani": 78.5253, "matched_fragments": 354, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Devosiaceae;g__Devosia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Devosiaceae", "g__Devosia", "s__Devosia sp023436745" ], "_genome_taxon": [ "Pseudomonadota", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Devosiaceae", "g__Devosia", "s__Devosia sp023436745", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhizobiales", "Devosiaceae", "Devosia", "Devosia", "sp023436745" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }