{ "type": "genome", "identifier": "GCA_023422735.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023422735.1", "bioproject": "PRJNA682348", "biosample": "SAMN17040269", "wgs_master": "JAFAGL000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_SBlB_24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2342273v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/422/735/GCA_023422735.1_ASM2342273v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Blumenau" ], "sample_host_location_id": [], "data_size": "0.779 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 61.46, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2743223", "Number of Sequences": "332", "Longest Sequences (bp)": "38579", "N50 (bp)": "9791", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.0", "Number of CDSs": "2349", "Average Protein Length": "297.7", "Coding Ratio (%)": "76.5", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, "species_taxid": 1776730, "relation_to_type": "type", "validated": true, "ani": 77.4705, "matched_fragments": 209, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sangaii", "strain": "strain=DSM 100039", "accession": "GCA_014207355.1", "taxid": 505389, "species_taxid": 505389, "relation_to_type": "type", "validated": true, "ani": 77.4397, "matched_fragments": 148, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 77.4359, "matched_fragments": 167, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 77.3624, "matched_fragments": 180, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium albiziae", "strain": "strain=DSM 21822", "accession": "GCA_900114255.1", "taxid": 335020, "species_taxid": 335020, "relation_to_type": "type", "validated": true, "ani": 77.3485, "matched_fragments": 181, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 77.3226, "matched_fragments": 171, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 77.2808, "matched_fragments": 167, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 77.2774, "matched_fragments": 160, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 77.2634, "matched_fragments": 168, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter niigataensis", "strain": "strain=DSM 7050", "accession": "GCA_014200015.1", "taxid": 83265, "species_taxid": 83265, "relation_to_type": "type", "validated": true, "ani": 77.2587, "matched_fragments": 174, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium neociceri", "strain": "strain=CCANP35", "accession": "GCA_013520985.1", "taxid": 1307853, "species_taxid": 1307853, "relation_to_type": "type", "validated": true, "ani": 77.2111, "matched_fragments": 179, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium zhengzhouense", "strain": "strain=cd-1", "accession": "GCA_016124105.1", "taxid": 2781738, "species_taxid": 2781738, "relation_to_type": "type", "validated": true, "ani": 77.2057, "matched_fragments": 89, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 15910", "accession": "GCA_014138625.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 77.2033, "matched_fragments": 181, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter ciceronei", "strain": "strain=DSM 17455", "accession": "GCA_014138635.1", "taxid": 150723, "species_taxid": 150723, "relation_to_type": "type", "validated": true, "ani": 77.1953, "matched_fragments": 183, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=DSM 7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 77.1946, "matched_fragments": 181, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 77.1804, "matched_fragments": 151, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 77.1312, "matched_fragments": 83, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aminobacter aminovorans", "strain": "strain=NCTC10684", "accession": "GCA_900445235.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 77.1245, "matched_fragments": 185, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=HC19", "accession": "GCA_014595955.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.1007, "matched_fragments": 123, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudaminobacter soli", "strain": "strain=19-2017", "accession": "GCA_018310375.1", "taxid": 2831468, "species_taxid": 2831468, "relation_to_type": "type", "validated": true, "ani": 77.1007, "matched_fragments": 123, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor arenosus", "strain": "strain=CAU 1489", "accession": "GCA_009742725.1", "taxid": 2682096, "species_taxid": 2682096, "relation_to_type": "type", "validated": true, "ani": 77.097, "matched_fragments": 135, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella intermedia", "strain": "strain=NCTC12171", "accession": "GCA_900454225.1", "taxid": 94625, "species_taxid": 94625, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0915, "matched_fragments": 125, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor alexandrii", "strain": "strain=Z3-1", "accession": "GCA_004000215.1", "taxid": 2448161, "species_taxid": 2448161, "relation_to_type": "type", "validated": true, "ani": 77.0903, "matched_fragments": 135, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 77.0594, "matched_fragments": 171, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 76.9898, "matched_fragments": 169, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 76.9829, "matched_fragments": 177, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", "taxid": 536018, "species_taxid": 536018, "relation_to_type": "type", "validated": true, "ani": 76.9764, "matched_fragments": 179, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium lentis", "strain": "strain=BLR27", "accession": "GCA_019684715.1", "taxid": 1138194, "species_taxid": 1138194, "relation_to_type": "type", "validated": true, "ani": 76.9452, "matched_fragments": 87, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium metallidurans", "strain": "strain=DSM 26575", "accession": "GCA_014196505.1", "taxid": 1265931, "species_taxid": 1265931, "relation_to_type": "type", "validated": true, "ani": 76.8739, "matched_fragments": 92, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium aethiopicum", "strain": "strain=HBR26", "accession": "GCA_900094625.1", "taxid": 1138170, "species_taxid": 1138170, "relation_to_type": "type", "validated": true, "ani": 76.769, "matched_fragments": 105, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pseudoryzae", "strain": "strain=DSM 19479", "accession": "GCA_011046245.1", "taxid": 379684, "species_taxid": 379684, "relation_to_type": "type", "validated": true, "ani": 76.6973, "matched_fragments": 112, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella haematophila", "strain": "strain=CCUG 38531", "accession": "GCA_005938105.1", "taxid": 419474, "species_taxid": 419474, "relation_to_type": "type", "validated": true, "ani": 76.6969, "matched_fragments": 119, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium pellucidum", "strain": "strain=BT25", "accession": "GCA_013327855.1", "taxid": 2740464, "species_taxid": 2740464, "relation_to_type": "type", "validated": true, "ani": 76.4808, "matched_fragments": 113, "total_fragments": 745, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 61.46, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014652875.1", "gtdb_species": "s__Corticibacterium populi", "ani": 79.69, "matched_fragments": 376, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Corticibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018457165.1", "gtdb_species": "s__Corticibacterium sp018457165", "ani": 79.4295, "matched_fragments": 379, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Corticibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002316345.1", "gtdb_species": "s__Corticibacterium sp002316345", "ani": 79.3562, "matched_fragments": 340, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Corticibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017813335.1", "gtdb_species": "s__Tianweitania sediminis", "ani": 78.2712, "matched_fragments": 271, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Tianweitania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001014615.2", "gtdb_species": "s__Aquamicrobium_A sp001014615", "ani": 77.5909, "matched_fragments": 174, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003590645.1", "gtdb_species": "s__Pseudaminobacter sp900116595", "ani": 77.535, "matched_fragments": 210, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011045115.1", "gtdb_species": "s__Pseudaminobacter zhangyensis", "ani": 77.4809, "matched_fragments": 209, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017306585.1", "gtdb_species": "s__Mesorhizobium sp017306585", "ani": 77.3792, "matched_fragments": 165, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003996995.1", "gtdb_species": "s__Mesorhizobium sp003996995", "ani": 77.3459, "matched_fragments": 158, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.74", "num_clustered_genomes": 32, "status": "-" }, { "accession": "GCA_014189435.1", "gtdb_species": "s__Mesorhizobium loti_G", "ani": 77.3203, "matched_fragments": 173, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018555685.1", "gtdb_species": "s__Aminobacter anthyllidis", "ani": 77.3, "matched_fragments": 185, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001303895.1", "gtdb_species": "s__Mesorhizobium sp001303895", "ani": 77.2584, "matched_fragments": 165, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113935.1", "gtdb_species": "s__Aquamicrobium_A aerolatum", "ani": 77.2538, "matched_fragments": 121, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006442315.1", "gtdb_species": "s__Mesorhizobium sp006442315", "ani": 77.169, "matched_fragments": 176, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014863355.1", "gtdb_species": "s__Aminobacter carboxidus", "ani": 77.1308, "matched_fragments": 189, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011045125.1", "gtdb_species": "s__Pseudaminobacter camelthorni", "ani": 77.1306, "matched_fragments": 168, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900445235.1", "gtdb_species": "s__Aminobacter aminovorans", "ani": 77.1245, "matched_fragments": 185, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001427385.1", "gtdb_species": "s__Mesorhizobium sp001427385", "ani": 77.0635, "matched_fragments": 168, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008180155.1", "gtdb_species": "s__Aquamicrobium_A microcysteis", "ani": 77.0358, "matched_fragments": 159, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000236565.1", "gtdb_species": "s__Pseudaminobacter alhagi", "ani": 77.0143, "matched_fragments": 165, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Pseudaminobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013327855.1", "gtdb_species": "s__Phyllobacterium pellucidum", "ani": 76.4808, "matched_fragments": 113, "total_fragments": 745, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Rhizobiaceae", "g__Corticibacterium", "s__Corticibacterium sp023422735" ], "_genome_taxon": [ "Pseudomonadota", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhizobiales", "f__Rhizobiaceae", "g__Corticibacterium", "s__Corticibacterium sp023422735", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhizobiales", "Rhizobiaceae", "Corticibacterium", "Corticibacterium", "sp023422735" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }