{ "type": "genome", "identifier": "GCA_023423655.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023423655.1", "bioproject": "PRJNA682348", "biosample": "SAMN17040236", "wgs_master": "JAFAFE000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_SBlB_161", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2342365v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/423/655/GCA_023423655.1_ASM2342365v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Blumenau" ], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2932839", "Number of Sequences": "7", "Longest Sequences (bp)": "1004084", "N50 (bp)": "768565", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.2", "Number of CDSs": "2720", "Average Protein Length": "318.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": "strain=203-1", "accession": "GCA_001610975.1", "taxid": 2448440, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 78.4381, "matched_fragments": 263, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 77.7443, "matched_fragments": 237, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.6066, "matched_fragments": 262, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium xenophagum", "strain": "strain=NBRC 107872", "accession": "GCA_000367345.1", "taxid": 121428, "species_taxid": 121428, "relation_to_type": "type", "validated": true, "ani": 77.5225, "matched_fragments": 254, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis witflariensis", "strain": "strain=DSM 14551", "accession": "GCA_002205635.1", "taxid": 173675, "species_taxid": 173675, "relation_to_type": "type", "validated": true, "ani": 77.5072, "matched_fragments": 255, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 77.4836, "matched_fragments": 245, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis solisilvae", "strain": "strain=R366", "accession": "GCA_015475875.1", "taxid": 1886788, "species_taxid": 1886788, "relation_to_type": "type", "validated": true, "ani": 77.3014, "matched_fragments": 254, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=UI2", "accession": "GCA_900177755.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 77.2721, "matched_fragments": 261, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium limneticum", "strain": "strain=DSM 25076", "accession": "GCA_008710155.1", "taxid": 1007511, "species_taxid": 1007511, "relation_to_type": "type", "validated": true, "ani": 77.2325, "matched_fragments": 231, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis bauzanensis", "strain": "strain=DSM 22271", "accession": "GCA_002205675.1", "taxid": 651663, "species_taxid": 651663, "relation_to_type": "type", "validated": true, "ani": 77.2212, "matched_fragments": 225, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 77.2013, "matched_fragments": 273, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=NBRC 16415", "accession": "GCA_000632125.2", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 77.1833, "matched_fragments": 170, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis bauzanensis", "strain": "strain=CGMCC 1.8959", "accession": "GCA_014645635.1", "taxid": 651663, "species_taxid": 651663, "relation_to_type": "type", "validated": true, "ani": 77.1822, "matched_fragments": 228, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium quisquiliarum", "strain": "strain=P25", "accession": "GCA_000445065.1", "taxid": 538379, "species_taxid": 538379, "relation_to_type": "type", "validated": true, "ani": 77.1084, "matched_fragments": 191, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium estronivorans", "strain": "strain=AXB", "accession": "GCA_008692605.1", "taxid": 1577690, "species_taxid": 1577690, "relation_to_type": "type", "validated": true, "ani": 77.1071, "matched_fragments": 236, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium cupriresistens", "strain": "strain=CCTCC AB 2011146", "accession": "GCA_004152865.1", "taxid": 1132417, "species_taxid": 1132417, "relation_to_type": "type", "validated": true, "ani": 77.0781, "matched_fragments": 231, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.0624, "matched_fragments": 221, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 77.0423, "matched_fragments": 224, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.0343, "matched_fragments": 220, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis panaciterrae", "strain": "strain=DSM 27164", "accession": "GCA_011762125.1", "taxid": 363841, "species_taxid": 363841, "relation_to_type": "type", "validated": true, "ani": 77.033, "matched_fragments": 259, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 76.9843, "matched_fragments": 137, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium 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"GCA_001717955.1", "taxid": 1560345, "species_taxid": 1560345, "relation_to_type": "type", "validated": true, "ani": 76.8537, "matched_fragments": 154, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium ummariense", "strain": "strain=RL-3", "accession": "GCA_000447205.1", "taxid": 420994, "species_taxid": 420994, "relation_to_type": "type", "validated": true, "ani": 76.6789, "matched_fragments": 196, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus gelatinilyticus", "strain": "strain=1NDH52", "accession": "GCA_018398395.1", "taxid": 2835536, "species_taxid": 2835536, "relation_to_type": "type", "validated": true, "ani": 76.6237, "matched_fragments": 120, "total_fragments": 974, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, 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