{
    "type": "genome",
    "identifier": "GCA_023425365.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023425365.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17040173",
        "wgs_master": "JAFACT000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_SBB_54",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2342536v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/425/365/GCA_023425365.1_ASM2342536v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Sus scrofa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Belem"
        ],
        "sample_host_location_id": [],
        "data_size": "1.316 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 47.92,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4639122",
        "Number of Sequences": "314",
        "Longest Sequences (bp)": "107012",
        "N50 (bp)": "23296",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.8",
        "Number of CDSs": "4196",
        "Average Protein Length": "306.5",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Brucella intermedia",
                "strain": "strain=LMG 3301",
                "accession": "GCA_000182645.1",
                "taxid": 94625,
                "species_taxid": 94625,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.2445,
                "matched_fragments": 1124,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brucella intermedia",
                "strain": "strain=NCTC12171",
                "accession": "GCA_900454225.1",
                "taxid": 94625,
                "species_taxid": 94625,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.232,
                "matched_fragments": 1128,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Brucella tritici",
                "strain": "strain=LMG 18957",
                "accession": "GCA_008932295.1",
                "taxid": 94626,
                "species_taxid": 94626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.581,
                "matched_fragments": 986,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella anthropi",
                "strain": "strain=NCTC12168",
                "accession": "GCA_900454235.1",
                "taxid": 529,
                "species_taxid": 529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3597,
                "matched_fragments": 1005,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella anthropi",
                "strain": "strain=ATCC 49188",
                "accession": "GCA_000017405.1",
                "taxid": 529,
                "species_taxid": 529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3528,
                "matched_fragments": 1007,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pecoris",
                "strain": "strain=DSM 23868",
                "accession": "GCA_014197065.1",
                "taxid": 867683,
                "species_taxid": 867683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6073,
                "matched_fragments": 1001,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pecoris",
                "strain": "strain=08RB2639",
                "accession": "GCA_006376675.1",
                "taxid": 867683,
                "species_taxid": 867683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5933,
                "matched_fragments": 1005,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0677,
                "matched_fragments": 252,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
                "strain": "strain=3P27G6",
                "accession": "GCA_005503535.1",
                "taxid": 2502215,
                "species_taxid": 2502215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.855,
                "matched_fragments": 271,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibium microcysteis",
                "strain": "strain=NIBR3",
                "accession": "GCA_014495845.1",
                "taxid": 675281,
                "species_taxid": 675281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8321,
                "matched_fragments": 203,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_907164595.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8172,
                "matched_fragments": 204,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
                "strain": "strain=CAU 1489",
                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6677,
                "matched_fragments": 175,
                "total_fragments": 1386,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 47.92,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000182645.1",
                "gtdb_species": "s__Ochrobactrum intermedium",
                "ani": 97.2469,
                "matched_fragments": 1124,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 56,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008932435.1",
                "gtdb_species": "s__Ochrobactrum pseudintermedium",
                "ani": 91.3192,
                "matched_fragments": 1014,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900470195.1",
                "gtdb_species": "s__Ochrobactrum sp900470195",
                "ani": 90.0605,
                "matched_fragments": 1029,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900473915.1",
                "gtdb_species": "s__Ochrobactrum sp900473915",
                "ani": 89.3309,
                "matched_fragments": 1004,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008932295.1",
                "gtdb_species": "s__Ochrobactrum tritici",
                "ani": 87.5593,
                "matched_fragments": 988,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_902825325.1",
                "gtdb_species": "s__Ochrobactrum sp003176975",
                "ani": 87.3587,
                "matched_fragments": 991,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000017405.1",
                "gtdb_species": "s__Ochrobactrum anthropi",
                "ani": 87.3424,
                "matched_fragments": 1008,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.518,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 55,
                "status": "-"
            },
            {
                "accession": "GCA_012103035.1",
                "gtdb_species": "s__Ochrobactrum oryzae",
                "ani": 86.8682,
                "matched_fragments": 936,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_006376675.1",
                "gtdb_species": "s__Ochrobactrum pecoris",
                "ani": 86.5933,
                "matched_fragments": 1005,
                "total_fragments": 1386,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Ochrobactrum",
        "s__Ochrobactrum intermedium"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Ochrobactrum",
        "s__Ochrobactrum intermedium",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Rhizobiaceae",
        "Ochrobactrum",
        "Ochrobactrum",
        "intermedium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}