{ "type": "genome", "identifier": "GCA_023438245.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023438245.1", "bioproject": "PRJNA682348", "biosample": "SAMN17045305", "wgs_master": "JAEXRD000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_HBrB_246", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2343824v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/438/245/GCA_023438245.1_ASM2343824v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Braganca" ], "sample_host_location_id": [], "data_size": "0.826 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3032807", "Number of Sequences": "171", "Longest Sequences (bp)": "137010", "N50 (bp)": "26914", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "2686", "Average Protein Length": "331.1", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 78.6889, "matched_fragments": 386, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 78.6504, "matched_fragments": 347, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 78.6109, "matched_fragments": 361, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 78.5748, "matched_fragments": 370, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucidesulfovibrio longus", "strain": "strain=DSM 6739", "accession": "GCA_000420485.1", "taxid": 889, "species_taxid": 889, "relation_to_type": "type", "validated": true, "ani": 78.4983, "matched_fragments": 327, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio putealis", "strain": "strain=DSM 16056", "accession": "GCA_000429325.1", "taxid": 270496, 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"relation_to_type": "type", "validated": true, "ani": 77.8587, "matched_fragments": 247, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio cashew", "strain": "strain=SRB007", "accession": "GCA_009762795.1", "taxid": 2678688, "species_taxid": 2678688, "relation_to_type": "type", "validated": true, "ani": 77.8188, "matched_fragments": 255, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=ATCC 19364", "accession": "GCA_000468495.1", "taxid": 879, "species_taxid": 879, "relation_to_type": "type", "validated": true, "ani": 77.6659, "matched_fragments": 230, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, 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