{
    "type": "genome",
    "identifier": "GCA_023439145.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023439145.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17045243",
        "wgs_master": "JAEXOT000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_HBrB_155",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2343914v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/439/145/GCA_023439145.1_ASM2343914v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Braganca"
        ],
        "sample_host_location_id": [],
        "data_size": "0.811 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2864946",
        "Number of Sequences": "402",
        "Longest Sequences (bp)": "30277",
        "N50 (bp)": "8467",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.8",
        "Number of CDSs": "2146",
        "Average Protein Length": "323.9",
        "Coding Ratio (%)": "72.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bilophila wadsworthia",
                "strain": "strain=ATCC 49260",
                "accession": "GCA_000701705.1",
                "taxid": 35833,
                "species_taxid": 35833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.9364,
                "matched_fragments": 728,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cupidesulfovibrio liaohensis",
                "strain": "strain=XJ01",
                "accession": "GCA_011682075.1",
                "taxid": 2604158,
                "species_taxid": 2604158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8091,
                "matched_fragments": 106,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mailhella massiliensis",
                "strain": "strain=Marseille-P3199",
                "accession": "GCA_900155525.1",
                "taxid": 1903261,
                "species_taxid": 1903261,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7913,
                "matched_fragments": 113,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio vulgaris",
                "strain": "strain=Hildenborough",
                "accession": "GCA_902167245.1",
                "taxid": 881,
                "species_taxid": 881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6147,
                "matched_fragments": 95,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio piger",
                "strain": "strain=ATCC 29098",
                "accession": "GCA_000156375.1",
                "taxid": 901,
                "species_taxid": 901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.5629,
                "matched_fragments": 124,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupidesulfovibrio termitidis",
                "strain": "strain=HI1",
                "accession": "GCA_000504305.1",
                "taxid": 42252,
                "species_taxid": 42252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4912,
                "matched_fragments": 124,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio vulgaris",
                "strain": "strain=Hildenborough",
                "accession": "GCA_000195755.1",
                "taxid": 881,
                "species_taxid": 881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4462,
                "matched_fragments": 96,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupidesulfovibrio oxamicus",
                "strain": "strain=NCIMB 9442",
                "accession": "GCA_015731765.1",
                "taxid": 32016,
                "species_taxid": 32016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3824,
                "matched_fragments": 116,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio subterraneus",
                "strain": "strain=HN2",
                "accession": "GCA_013340285.1",
                "taxid": 2718620,
                "species_taxid": 2718620,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8883,
                "matched_fragments": 65,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfomicrobium escambiense",
                "strain": "strain=DSM 10707",
                "accession": "GCA_000428825.1",
                "taxid": 29503,
                "species_taxid": 29503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2754,
                "matched_fragments": 62,
                "total_fragments": 749,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000701705.1",
                "gtdb_species": "s__Bilophila wadsworthia",
                "ani": 98.9364,
                "matched_fragments": 728,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.41",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900550745.1",
                "gtdb_species": "s__Bilophila sp900550745",
                "ani": 92.5926,
                "matched_fragments": 409,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "97.27",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900553145.1",
                "gtdb_species": "s__Bilophila sp900553145",
                "ani": 90.2422,
                "matched_fragments": 569,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902373525.1",
                "gtdb_species": "s__Bilophila sp902373525",
                "ani": 84.9454,
                "matched_fragments": 513,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019114025.1",
                "gtdb_species": "s__Bilophila faecipullorum",
                "ani": 82.3341,
                "matched_fragments": 332,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015062205.1",
                "gtdb_species": "s__Desulfovibrio desulfuricans_D",
                "ani": 77.1586,
                "matched_fragments": 85,
                "total_fragments": 749,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfovibrionia",
        "o__Desulfovibrionales",
        "f__Desulfovibrionaceae",
        "g__Bilophila",
        "s__Bilophila wadsworthia"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfovibrionia",
        "o__Desulfovibrionales",
        "f__Desulfovibrionaceae",
        "g__Bilophila",
        "s__Bilophila wadsworthia",
        "Bacteria",
        "Desulfobacterota",
        "Desulfovibrionia",
        "Desulfovibrionales",
        "Desulfovibrionaceae",
        "Bilophila",
        "Bilophila",
        "wadsworthia"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}