{
    "type": "genome",
    "identifier": "GCA_023442085.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023442085.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17033076",
        "wgs_master": "JAEZMT000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_CFB_124",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2344208v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/442/085/GCA_023442085.1_ASM2344208v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Bos taurus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Fortaleza"
        ],
        "sample_host_location_id": [],
        "data_size": "1.251 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 8.33,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4548218",
        "Number of Sequences": "488",
        "Longest Sequences (bp)": "78361",
        "N50 (bp)": "12298",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.9",
        "Number of CDSs": "3839",
        "Average Protein Length": "308.5",
        "Coding Ratio (%)": "78.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_023571765.1",
                "taxid": 186280,
                "species_taxid": 186280,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Xanthobacter oligotrophicus",
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                "accession": "GCA_008364685.1",
                "taxid": 2607286,
                "species_taxid": 2607286,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter autotrophicus",
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                "accession": "GCA_005871085.1",
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                "matched_fragments": 850,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter dioxanivorans",
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                "accession": "GCA_016807805.1",
                "taxid": 2528964,
                "species_taxid": 2528964,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 923,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Xanthobacter tagetidis",
                "strain": "strain=DSM 11105",
                "accession": "GCA_014206845.1",
                "taxid": 60216,
                "species_taxid": 60216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6013,
                "matched_fragments": 763,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter tagetidis",
                "strain": "strain=ATCC 700314",
                "accession": "GCA_003667445.1",
                "taxid": 60216,
                "species_taxid": 60216,
                "relation_to_type": "type",
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                "ani": 82.5833,
                "matched_fragments": 755,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter agilis",
                "strain": "strain=LMG 16336",
                "accession": "GCA_021730435.1",
                "taxid": 47492,
                "species_taxid": 47492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.285,
                "matched_fragments": 654,
                "total_fragments": 1282,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azorhizobium caulinodans",
                "strain": "strain=ORS 571",
                "accession": "GCA_000010525.1",
                "taxid": 7,
                "species_taxid": 7,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9843,
                "matched_fragments": 629,
                "total_fragments": 1282,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
                "strain": "strain=DSM 506",
                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.095,
                "matched_fragments": 475,
                "total_fragments": 1282,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 8.33,
            "strain_heterogeneity": 100.0
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        "gtdb_result": [
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                "accession": "GCF_017875275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012275355.1",
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                "total_fragments": 1282,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000702385.1",
                "gtdb_species": "s__Xanthobacter sp000702385",
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                "matched_fragments": 1106,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.09",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_012932745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
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                "status": "-"
            },
            {
                "accession": "GCA_000017645.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_005871085.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016807805.1",
                "gtdb_species": "s__Xanthobacter sp016807805",
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                "matched_fragments": 925,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003667445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Xanthobacter",
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                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Xanthobacteraceae",
        "g__Xanthobacter",
        "s__Xanthobacter sp023442085"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Xanthobacteraceae",
        "g__Xanthobacter",
        "s__Xanthobacter sp023442085",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Xanthobacteraceae",
        "Xanthobacter",
        "Xanthobacter",
        "sp023442085"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}