{ "type": "genome", "identifier": "GCA_023442865.1", "organism": "Bacteroidota bacterium", "title": "Bacteroidota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023442865.1", "bioproject": "PRJNA682348", "biosample": "SAMN17040025", "wgs_master": "JAEZXB000000000.1", "refseq_category": "na", "taxid": "1898104", "species_taxid": "1898104", "organism_name": "Bacteroidota bacterium", "infraspecific_name": "", "isolate": "OH_PFB_183", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2344286v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/442/865/GCA_023442865.1_ASM2344286v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidota bacterium" ], "sample_taxid": [ "1898104" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Fortaleza" ], "sample_host_location_id": [], "data_size": "1.175 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4089528", "Number of Sequences": "443", "Longest Sequences (bp)": "37648", "N50 (bp)": "11892", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.1", "Number of CDSs": "2794", "Average Protein Length": "368.5", "Coding Ratio (%)": "75.5", "Number of rRNAs": "0", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parabacteroides johnsonii", "strain": "strain=DSM 18315", "accession": "GCA_025151045.1", "taxid": 387661, "species_taxid": 387661, "relation_to_type": "type", "validated": true, "ani": 98.5669, "matched_fragments": 1010, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parabacteroides johnsonii", "strain": "strain=DSM 18315", "accession": "GCA_000156495.1", "taxid": 387661, "species_taxid": 387661, "relation_to_type": "type", "validated": true, "ani": 98.4176, "matched_fragments": 1016, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=NCTC13052", "accession": "GCA_900445495.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 90.7748, "matched_fragments": 877, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=ATCC 43184", "accession": "GCA_000154105.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 90.6921, "matched_fragments": 882, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parabacteroides merdae", "strain": "strain=ATCC 43184", "accession": "GCA_025151215.1", "taxid": 46503, "species_taxid": 46503, "relation_to_type": "type", "validated": true, "ani": 90.6362, "matched_fragments": 881, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola faecicola", "strain": "strain=AGMB03916", "accession": "GCA_013618865.1", "taxid": 2739389, "species_taxid": 2739389, "relation_to_type": "type", "validated": true, "ani": 77.7674, "matched_fragments": 59, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000156495.1", "gtdb_species": "s__Parabacteroides johnsonii", "ani": 98.4176, "matched_fragments": 1016, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCF_000154105.1", "gtdb_species": "s__Parabacteroides merdae", "ani": 90.6855, "matched_fragments": 882, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.77", "num_clustered_genomes": 85, "status": "-" }, { "accession": "GCF_014287585.1", "gtdb_species": "s__Parabacteroides sp014287585", "ani": 89.1431, "matched_fragments": 914, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900760525.1", "gtdb_species": "s__Parabacteroides sp900760525", "ani": 87.9129, "matched_fragments": 791, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900155425.1", "gtdb_species": "s__Parabacteroides massiliensis", "ani": 87.5638, "matched_fragments": 817, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910577325.1", "gtdb_species": "s__Parabacteroides sp910577325", "ani": 85.9794, "matched_fragments": 700, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017937385.1", "gtdb_species": "s__Parabacteroides sp017937385", "ani": 83.6027, "matched_fragments": 635, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Tannerellaceae", "g__Parabacteroides", "s__Parabacteroides johnsonii" ], "_genome_taxon": [ "Bacteroidota", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Tannerellaceae", "g__Parabacteroides", "s__Parabacteroides johnsonii", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Tannerellaceae", "Parabacteroides", "Parabacteroides", "johnsonii" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }