{ "type": "genome", "identifier": "GCA_023443095.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023443095.1", "bioproject": "PRJNA682348", "biosample": "SAMN17039993", "wgs_master": "JAEZVV000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_PFB_136", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2344309v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/443/095/GCA_023443095.1_ASM2344309v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Fortaleza" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3374571", "Number of Sequences": "201", "Longest Sequences (bp)": "96014", "N50 (bp)": "25867", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "2999", "Average Protein Length": "319.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cupriavidus cauae", "strain": "strain=MKL-01", "accession": "GCA_008632125.1", "taxid": 2608999, "species_taxid": 2608999, "relation_to_type": "type", "validated": true, "ani": 77.4724, "matched_fragments": 312, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 77.4128, "matched_fragments": 273, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus neocaledonicus", "strain": "strain=STM6070", "accession": "GCA_000372525.1", "taxid": 1040979, "species_taxid": 1040979, "relation_to_type": "type", "validated": true, "ani": 77.3911, "matched_fragments": 335, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 77.3282, "matched_fragments": 260, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 77.319, "matched_fragments": 308, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 77.2466, "matched_fragments": 261, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 77.1972, "matched_fragments": 299, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia mannitolilytica", "strain": "strain=LMG 6866", "accession": "GCA_905397375.1", "taxid": 105219, "species_taxid": 105219, "relation_to_type": "type", "validated": true, "ani": 77.1731, "matched_fragments": 207, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus oxalaticus", "strain": "strain=Ox1", "accession": "GCA_016894385.1", "taxid": 96344, "species_taxid": 96344, "relation_to_type": "type", "validated": true, "ani": 77.1532, "matched_fragments": 320, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 77.1154, "matched_fragments": 297, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0423, "matched_fragments": 259, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=CCUG 39790", "accession": "GCA_008801975.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 77.0334, "matched_fragments": 214, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 77.0119, "matched_fragments": 250, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Castellaniella defragrans", "strain": "strain=DSM 12141", "accession": "GCA_014203015.1", "taxid": 75697, "species_taxid": 75697, "relation_to_type": "type", "validated": true, "ani": 77.0086, "matched_fragments": 226, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 77.0058, "matched_fragments": 296, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia lacustris", "strain": "strain=HL-12", "accession": "GCA_002105195.1", "taxid": 764842, "species_taxid": 764842, "relation_to_type": "type", "validated": true, "ani": 76.978, "matched_fragments": 279, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella namucuonensis", "strain": "strain=CGMCC 1.11014", "accession": "GCA_900116645.1", "taxid": 1035707, "species_taxid": 1035707, "relation_to_type": "type", "validated": true, "ani": 76.9401, "matched_fragments": 310, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia arenosa", "strain": "strain=MC02", "accession": "GCA_004614185.1", "taxid": 2561931, "species_taxid": 2561931, "relation_to_type": "type", "validated": true, "ani": 76.9395, "matched_fragments": 218, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 76.9346, "matched_fragments": 235, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 76.933, "matched_fragments": 242, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 76.9067, "matched_fragments": 249, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 76.8898, "matched_fragments": 244, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella megalosphaeroides", "strain": "strain=6FBBBH3", "accession": "GCA_003609995.1", "taxid": 2494234, "species_taxid": 2494234, "relation_to_type": "type", "validated": true, "ani": 76.8506, "matched_fragments": 100, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, "relation_to_type": "type", "validated": true, "ani": 76.8463, "matched_fragments": 192, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus basilensis", "strain": "strain=DSM 11853", "accession": "GCA_008801925.2", "taxid": 68895, "species_taxid": 68895, "relation_to_type": "suspected-type", "validated": true, "ani": 76.836, "matched_fragments": 273, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter mucicolens", "strain": "strain=LMG 26685", "accession": "GCA_902859725.1", "taxid": 1389922, "species_taxid": 1389922, "relation_to_type": "type", "validated": true, "ani": 76.8299, "matched_fragments": 212, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella parvirubra", "strain": "strain=YIT 11816", "accession": "GCA_000250875.1", "taxid": 437898, "species_taxid": 437898, "relation_to_type": "type", "validated": true, "ani": 76.8261, "matched_fragments": 110, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", 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"total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella margarita", "strain": "strain=FT109W", "accession": "GCA_009857535.1", "taxid": 2692170, "species_taxid": 2692170, "relation_to_type": "type", "validated": true, "ani": 76.7694, "matched_fragments": 221, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella faecalis", "strain": "strain=KGMB03119", "accession": "GCA_006337085.1", "taxid": 2584944, "species_taxid": 2584944, "relation_to_type": "type", "validated": true, "ani": 76.4473, "matched_fragments": 77, "total_fragments": 1020, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016716275.1", "gtdb_species": "s__JADJWR01 sp016716275", "ani": 78.724, "matched_fragments": 381, "total_fragments": 1020, "gtdb_taxonomy": 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