{
    "type": "genome",
    "identifier": "GCA_023444445.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023444445.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17045182",
        "wgs_master": "JAEXMK000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_HBlB_51",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2344444v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/444/445/GCA_023444445.1_ASM2344444v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Blumenau"
        ],
        "sample_host_location_id": [],
        "data_size": "1.191 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 67.9,
        "contamination": 12.5,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4213604",
        "Number of Sequences": "261",
        "Longest Sequences (bp)": "139236",
        "N50 (bp)": "22334",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "3850",
        "Average Protein Length": "310.2",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Agrobacterium leguminum",
                "strain": "strain=MOPV5",
                "accession": "GCA_015704895.1",
                "taxid": 2792015,
                "species_taxid": 2792015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9042,
                "matched_fragments": 1067,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium salinitolerans",
                "strain": "strain=YIC 5082",
                "accession": "GCA_002008225.1",
                "taxid": 1183413,
                "species_taxid": 1183413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8923,
                "matched_fragments": 1054,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium tumefaciens",
                "strain": "strain=ICMP 5856T",
                "accession": "GCA_009498475.1",
                "taxid": 358,
                "species_taxid": 358,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.7308,
                "matched_fragments": 1074,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium tumefaciens",
                "strain": "strain=B6",
                "accession": "GCA_900045375.1",
                "taxid": 358,
                "species_taxid": 358,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.6919,
                "matched_fragments": 1085,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrobacterium tumefaciens",
                "strain": "strain=B6",
                "accession": "GCA_001541315.1",
                "taxid": 358,
                "species_taxid": 358,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.6422,
                "matched_fragments": 1079,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium pusense",
                "strain": "strain=LMG 25623",
                "accession": "GCA_900102105.1",
                "taxid": 648995,
                "species_taxid": 648995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1312,
                "matched_fragments": 1046,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium pusense",
                "strain": "strain=NRCPB10",
                "accession": "GCA_002008275.1",
                "taxid": 648995,
                "species_taxid": 648995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0849,
                "matched_fragments": 1065,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium oryzihabitans",
                "strain": "strain=M15",
                "accession": "GCA_010669145.1",
                "taxid": 2267833,
                "species_taxid": 2267833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1583,
                "matched_fragments": 1036,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1793,
                "matched_fragments": 450,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
                "strain": "strain=C3",
                "accession": "GCA_022899935.1",
                "taxid": 1817964,
                "species_taxid": 1817964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6237,
                "matched_fragments": 456,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4283,
                "matched_fragments": 394,
                "total_fragments": 1275,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 67.9,
            "contamination": 12.5,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005221325.1",
                "gtdb_species": "s__Agrobacterium sp900012625",
                "ani": 90.3861,
                "matched_fragments": 1113,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "97.65",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000092025.1",
                "gtdb_species": "s__Agrobacterium fabrum",
                "ani": 90.056,
                "matched_fragments": 1117,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "95.41",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCA_017744915.1",
                "gtdb_species": "s__Agrobacterium tumefaciens_I",
                "ani": 89.4077,
                "matched_fragments": 1063,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002943835.1",
                "gtdb_species": "s__Agrobacterium deltaense",
                "ani": 88.9828,
                "matched_fragments": 1095,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "95.20",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 64,
                "status": "-"
            },
            {
                "accession": "GCF_002008225.1",
                "gtdb_species": "s__Agrobacterium salinitolerans",
                "ani": 88.8825,
                "matched_fragments": 1055,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "95.71",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_001541315.1",
                "gtdb_species": "s__Agrobacterium tumefaciens",
                "ani": 88.629,
                "matched_fragments": 1080,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 248,
                "status": "-"
            },
            {
                "accession": "GCF_002005205.3",
                "gtdb_species": "s__Agrobacterium rhizogenes_A",
                "ani": 88.1904,
                "matched_fragments": 1079,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.60",
                "min_intra_species_ani": "97.88",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_900102105.1",
                "gtdb_species": "s__Agrobacterium pusense",
                "ani": 88.134,
                "matched_fragments": 1045,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 79,
                "status": "-"
            },
            {
                "accession": "GCF_017726655.1",
                "gtdb_species": "s__Agrobacterium tumefaciens_B",
                "ani": 88.043,
                "matched_fragments": 1038,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_003241215.1",
                "gtdb_species": "s__Agrobacterium fabrum_A",
                "ani": 87.9457,
                "matched_fragments": 815,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007002745.1",
                "gtdb_species": "s__Agrobacterium rhizogenes_B",
                "ani": 87.8234,
                "matched_fragments": 1060,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005221385.1",
                "gtdb_species": "s__Agrobacterium sp900013535",
                "ani": 87.8037,
                "matched_fragments": 1065,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900012615.1",
                "gtdb_species": "s__Agrobacterium sp900012615",
                "ani": 87.5716,
                "matched_fragments": 1046,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
                "min_intra_species_ani": "97.45",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013337285.1",
                "gtdb_species": "s__Agrobacterium tumefaciens_H",
                "ani": 87.5119,
                "matched_fragments": 1057,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "97.88",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_010669145.1",
                "gtdb_species": "s__Agrobacterium oryzihabitans",
                "ani": 87.1543,
                "matched_fragments": 1037,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_000949895.1",
                "gtdb_species": "s__Agrobacterium arsenijevicii",
                "ani": 86.7292,
                "matched_fragments": 1047,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000949865.1",
                "gtdb_species": "s__Agrobacterium nepotum",
                "ani": 86.5124,
                "matched_fragments": 1011,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013390595.1",
                "gtdb_species": "s__Agrobacterium sp005938205",
                "ani": 82.0087,
                "matched_fragments": 776,
                "total_fragments": 1275,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Agrobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Agrobacterium",
        "s__Agrobacterium sp023444445"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Agrobacterium",
        "s__Agrobacterium sp023444445",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Rhizobiaceae",
        "Agrobacterium",
        "Agrobacterium",
        "sp023444445"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}