{
    "type": "genome",
    "identifier": "GCA_023444765.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023444765.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17045170",
        "wgs_master": "JAEXLY000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_HBlB_3",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2344476v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/444/765/GCA_023444765.1_ASM2344476v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Blumenau"
        ],
        "sample_host_location_id": [],
        "data_size": "0.937 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.29,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3451642",
        "Number of Sequences": "344",
        "Longest Sequences (bp)": "48649",
        "N50 (bp)": "13493",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.9",
        "Number of CDSs": "2908",
        "Average Protein Length": "319.8",
        "Coding Ratio (%)": "80.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Luteimonas marina",
                "strain": "strain=FR1330",
                "accession": "GCA_007859325.1",
                "taxid": 488485,
                "species_taxid": 488485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2525,
                "matched_fragments": 726,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas wenzhouensis",
                "strain": "strain=YD-1",
                "accession": "GCA_007859305.1",
                "taxid": 2599615,
                "species_taxid": 2599615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9175,
                "matched_fragments": 725,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas viscosa",
                "strain": "strain=XBU10",
                "accession": "GCA_008244685.1",
                "taxid": 1132694,
                "species_taxid": 1132694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8094,
                "matched_fragments": 789,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas saliphila",
                "strain": "strain=SJ-9",
                "accession": "GCA_016774335.1",
                "taxid": 2804919,
                "species_taxid": 2804919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7301,
                "matched_fragments": 784,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas padinae",
                "strain": "strain=KCTC 52403",
                "accession": "GCA_014652935.1",
                "taxid": 1714359,
                "species_taxid": 1714359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1015,
                "matched_fragments": 548,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas aestuarii",
                "strain": "strain=B9",
                "accession": "GCA_004357985.1",
                "taxid": 453837,
                "species_taxid": 453837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0017,
                "matched_fragments": 617,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas arsenica",
                "strain": "strain=26-35",
                "accession": "GCA_004352825.1",
                "taxid": 1586242,
                "species_taxid": 1586242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8965,
                "matched_fragments": 544,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas aquatica",
                "strain": "strain=RIB1-20",
                "accession": "GCA_022662575.1",
                "taxid": 450364,
                "species_taxid": 450364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5884,
                "matched_fragments": 545,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium gelatinicum",
                "strain": "strain=R-5-52-3",
                "accession": "GCA_008033445.1",
                "taxid": 2598725,
                "species_taxid": 2598725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3685,
                "matched_fragments": 471,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas weifangensis",
                "strain": "strain=WF-2",
                "accession": "GCA_003416885.1",
                "taxid": 2303539,
                "species_taxid": 2303539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3283,
                "matched_fragments": 480,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas salinisoli",
                "strain": "strain=SJ-92",
                "accession": "GCA_013425525.1",
                "taxid": 2752307,
                "species_taxid": 2752307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.253,
                "matched_fragments": 609,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenotrophomonas acidaminiphila",
                "strain": "strain=DSM 13117",
                "accession": "GCA_024221815.1",
                "taxid": 128780,
                "species_taxid": 128780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6692,
                "matched_fragments": 527,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas winnipegensis",
                "strain": "strain=NML 130738",
                "accession": "GCA_004283755.1",
                "taxid": 2480810,
                "species_taxid": 2480810,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6665,
                "matched_fragments": 516,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter arenosi",
                "strain": "strain=R7",
                "accession": "GCA_016613475.2",
                "taxid": 2795387,
                "species_taxid": 2795387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2166,
                "matched_fragments": 507,
                "total_fragments": 983,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.29,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007859325.1",
                "gtdb_species": "s__Luteimonas marina",
                "ani": 85.2376,
                "matched_fragments": 727,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000472505.1",
                "gtdb_species": "s__Luteimonas sp000472505",
                "ani": 85.0709,
                "matched_fragments": 729,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007859305.1",
                "gtdb_species": "s__Luteimonas wenzhouensis",
                "ani": 84.9318,
                "matched_fragments": 724,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008244685.1",
                "gtdb_species": "s__Luteimonas sp008244685",
                "ani": 84.7836,
                "matched_fragments": 791,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016774335.1",
                "gtdb_species": "s__Luteimonas sp016774335",
                "ani": 84.7295,
                "matched_fragments": 784,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004352825.1",
                "gtdb_species": "s__Luteimonas arsenica",
                "ani": 81.9243,
                "matched_fragments": 542,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000510725.1",
                "gtdb_species": "s__Pseudoxanthomonas sp000510725",
                "ani": 81.7511,
                "matched_fragments": 583,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.13",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_004352845.1",
                "gtdb_species": "s__Luteimonas terricola",
                "ani": 81.6394,
                "matched_fragments": 520,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013425525.1",
                "gtdb_species": "s__Luteimonas sp013425525",
                "ani": 81.2932,
                "matched_fragments": 606,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004284655.1",
                "gtdb_species": "s__Pseudoxanthomonas_A spadix_A",
                "ani": 80.6189,
                "matched_fragments": 522,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004284195.1",
                "gtdb_species": "s__Pseudoxanthomonas_A sp004284195",
                "ani": 80.455,
                "matched_fragments": 530,
                "total_fragments": 983,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Luteimonas_D",
        "s__Luteimonas_D sp023444765"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Xanthomonadales",
        "f__Xanthomonadaceae",
        "g__Luteimonas_D",
        "s__Luteimonas_D sp023444765",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Xanthomonadales",
        "Xanthomonadaceae",
        "Luteimonas",
        "D",
        "Luteimonas",
        "D",
        "sp023444765"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}