{ "type": "genome", "identifier": "GCA_023445565.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023445565.1", "bioproject": "PRJNA682348", "biosample": "SAMN17045143", "wgs_master": "JAEXKX000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "OH_HBlB_255", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2344556v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/445/565/GCA_023445565.1_ASM2344556v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Blumenau" ], "sample_host_location_id": [], "data_size": "1.023 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3746980", "Number of Sequences": "329", "Longest Sequences (bp)": "67838", "N50 (bp)": "16770", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "3205", "Average Protein Length": "323.1", "Coding Ratio (%)": "82.9", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methyloversatilis universalis", "strain": "strain=FAM5", "accession": "GCA_000214035.3", "taxid": 378211, "species_taxid": 378211, "relation_to_type": "type", "validated": true, "ani": 98.2698, "matched_fragments": 1032, "total_fragments": 1089, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 87.3983, "matched_fragments": 928, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis thermotolerans", "strain": "strain=3t", "accession": "GCA_000372885.1", "taxid": 1346290, "species_taxid": 1346290, "relation_to_type": "type", "validated": true, "ani": 83.5618, "matched_fragments": 762, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 78.9425, "matched_fragments": 374, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 78.6509, "matched_fragments": 321, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 78.6265, "matched_fragments": 392, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 78.498, "matched_fragments": 314, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 78.4403, "matched_fragments": 298, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 78.4232, "matched_fragments": 301, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 78.3893, "matched_fragments": 344, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 78.3178, "matched_fragments": 325, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 78.2274, "matched_fragments": 330, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=DSM 21091", "accession": "GCA_000814845.2", "taxid": 93222, "species_taxid": 93222, "relation_to_type": "type", "validated": true, "ani": 77.6791, "matched_fragments": 149, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=NCTC13161", "accession": "GCA_900187205.1", "taxid": 93222, "species_taxid": 93222, "relation_to_type": "type", "validated": true, "ani": 77.6747, "matched_fragments": 148, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus gilardii", "strain": "strain=ATCC 700815", "accession": "GCA_013004615.1", "taxid": 82541, "species_taxid": 82541, "relation_to_type": "type", "validated": true, "ani": 77.6332, "matched_fragments": 304, "total_fragments": 1089, "ani_threshold": 95, "status": "below_threshold" }, { 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"g__Methyloversatilis", "s__Methyloversatilis universalis", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Rhodocyclaceae", "Methyloversatilis", "Methyloversatilis", "universalis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }