{
    "type": "genome",
    "identifier": "GCA_023451335.1",
    "organism": "Actinomycetia bacterium",
    "title": "Actinomycetia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023451335.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17045595",
        "wgs_master": "JAEXZV000000000.1",
        "refseq_category": "na",
        "taxid": "1883427",
        "species_taxid": "1883427",
        "organism_name": "Actinomycetia bacterium",
        "infraspecific_name": "",
        "isolate": "OH_HDB_253",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2345133v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/451/335/GCA_023451335.1_ASM2345133v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Dourados"
        ],
        "sample_host_location_id": [],
        "data_size": "1.742 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6200790",
        "Number of Sequences": "157",
        "Longest Sequences (bp)": "137795",
        "N50 (bp)": "56459",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.6",
        "Number of CDSs": "5764",
        "Average Protein Length": "321.6",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rhodococcus qingshengii",
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                "accession": "GCA_001646745.1",
                "taxid": 334542,
                "species_taxid": 334542,
                "relation_to_type": "type",
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                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rhodococcus qingshengii",
                "strain": "strain=djl-6",
                "accession": "GCA_023221595.1",
                "taxid": 334542,
                "species_taxid": 334542,
                "relation_to_type": "type",
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                "ani": 98.7802,
                "matched_fragments": 1886,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rhodococcus erythropolis",
                "strain": "strain=JCM 3201",
                "accession": "GCA_003990875.1",
                "taxid": 1833,
                "species_taxid": 1833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5793,
                "matched_fragments": 1816,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rhodococcus erythropolis",
                "strain": "strain=NBRC 15567",
                "accession": "GCA_001552595.1",
                "taxid": 1833,
                "species_taxid": 1833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5704,
                "matched_fragments": 1804,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rhodococcus erythropolis",
                "strain": "strain=DSM 43066",
                "accession": "GCA_022134675.1",
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                "species_taxid": 1833,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5522,
                "matched_fragments": 1808,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Rhodococcus opacus",
                "strain": "strain=ATCC 51881",
                "accession": "GCA_012396235.1",
                "taxid": 37919,
                "species_taxid": 37919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2632,
                "matched_fragments": 707,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus opacus",
                "strain": "strain=DSM 43205",
                "accession": "GCA_001646735.1",
                "taxid": 37919,
                "species_taxid": 37919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2194,
                "matched_fragments": 709,
                "total_fragments": 1986,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001646745.1",
                "gtdb_species": "s__Rhodococcus qingshengii",
                "ani": 98.8067,
                "matched_fragments": 1866,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.5281,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.59",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 63,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001552595.1",
                "gtdb_species": "s__Rhodococcus erythropolis",
                "ani": 95.5691,
                "matched_fragments": 1804,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.5281,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 38,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_016598535.1",
                "gtdb_species": "s__Rhodococcus erythropolis_D",
                "ani": 94.0465,
                "matched_fragments": 1846,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_005938745.2",
                "gtdb_species": "s__Rhodococcus sp005938745",
                "ani": 83.3576,
                "matched_fragments": 1279,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001894805.1",
                "gtdb_species": "s__Rhodococcus globerulus",
                "ani": 83.1502,
                "matched_fragments": 1201,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_002245895.1",
                "gtdb_species": "s__Rhodococcus sp002245895",
                "ani": 82.1746,
                "matched_fragments": 1086,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012396235.1",
                "gtdb_species": "s__Rhodococcus opacus",
                "ani": 79.2872,
                "matched_fragments": 702,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 23,
                "status": "-"
            },
            {
                "accession": "GCF_000014565.1",
                "gtdb_species": "s__Rhodococcus jostii_A",
                "ani": 79.2507,
                "matched_fragments": 722,
                "total_fragments": 1986,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Rhodococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "95.96",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Mycobacteriales",
        "f__Mycobacteriaceae",
        "g__Rhodococcus",
        "s__Rhodococcus qingshengii"
    ],
    "_genome_taxon": [
        "Actinomycetia",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Mycobacteriales",
        "f__Mycobacteriaceae",
        "g__Rhodococcus",
        "s__Rhodococcus qingshengii",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Mycobacteriales",
        "Mycobacteriaceae",
        "Rhodococcus",
        "Rhodococcus",
        "qingshengii"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}