{ "type": "genome", "identifier": "GCA_023460975.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023460975.1", "bioproject": "PRJNA682348", "biosample": "SAMN17043613", "wgs_master": "JAEWOG000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "OH_SBlB_53", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2346097v1", "submitter": "LNCC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/460/975/GCA_023460975.1_ASM2346097v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [ "Sus scrofa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Blumenau" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 13.64, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3922526", "Number of Sequences": "106", "Longest Sequences (bp)": "274529", "N50 (bp)": "80771", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "3570", "Average Protein Length": "326.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides daphniae", "strain": "strain=CCM 7403", "accession": "GCA_014635145.1", "taxid": 402297, "species_taxid": 402297, "relation_to_type": "type", "validated": true, "ani": 80.141, "matched_fragments": 531, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 80.1074, "matched_fragments": 593, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 80.102, "matched_fragments": 567, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 80.096, "matched_fragments": 572, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.0821, "matched_fragments": 600, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavus Wang et al. 2016", "strain": "strain=CGMCC 1.12791", "accession": "GCA_014653115.1", "taxid": 2058780, "species_taxid": 2058780, "relation_to_type": "type", "validated": true, "ani": 80.0817, "matched_fragments": 592, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.0734, "matched_fragments": 613, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides eburneiflavus", "strain": "strain=MMS17-SY213", "accession": "GCA_004785795.1", "taxid": 2518372, "species_taxid": 2518372, "relation_to_type": "type", "validated": true, "ani": 80.0481, "matched_fragments": 578, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.0307, "matched_fragments": 577, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=DSM 29950", "accession": "GCA_016907475.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 80.0068, "matched_fragments": 595, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides malaquae", "strain": "strain=Y6", "accession": "GCA_015070385.1", "taxid": 2773426, "species_taxid": 2773426, "relation_to_type": "type", "validated": true, "ani": 80.0038, "matched_fragments": 474, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 79.9889, "matched_fragments": 607, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=KCTC 39551", "accession": "GCA_014779675.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 79.9637, "matched_fragments": 599, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 79.9359, "matched_fragments": 569, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 79.9291, "matched_fragments": 569, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 79.8759, "matched_fragments": 562, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 79.8544, "matched_fragments": 512, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides astragali", "strain": "strain=CGMCC 4.7327", "accession": "GCA_024436375.1", "taxid": 1776736, "species_taxid": 1776736, "relation_to_type": "type", "validated": true, "ani": 79.8539, "matched_fragments": 558, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alpinus", "strain": "strain=CGMCC 1.10697", "accession": "GCA_900112035.1", "taxid": 748909, "species_taxid": 748909, "relation_to_type": "type", "validated": true, "ani": 79.8436, "matched_fragments": 585, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 79.7162, "matched_fragments": 529, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 79.7027, "matched_fragments": 588, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 79.6193, "matched_fragments": 544, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides yefusunii", "strain": "strain=HY056", "accession": "GCA_004014875.1", "taxid": 2500546, "species_taxid": 2500546, "relation_to_type": "type", "validated": true, "ani": 79.1714, "matched_fragments": 422, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 79.0917, "matched_fragments": 545, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 79.0367, "matched_fragments": 543, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides nematodiphilus", "strain": "strain=R-N-C8", "accession": "GCA_020216525.1", "taxid": 2849669, "species_taxid": 2849669, "relation_to_type": "type", "validated": true, "ani": 78.9509, "matched_fragments": 434, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 13.64, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018275325.1", "gtdb_species": "s__Nocardioides sp018275325", "ani": 80.2635, "matched_fragments": 607, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428125.1", "gtdb_species": "s__Nocardioides sp001428125", "ani": 80.2403, "matched_fragments": 592, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004777465.1", "gtdb_species": "s__Nocardioides daphniae", "ani": 80.1578, "matched_fragments": 534, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017086465.1", "gtdb_species": "s__Nocardioides sp014265965", "ani": 80.1402, "matched_fragments": 584, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003633575.1", "gtdb_species": "s__Nocardioides sp003633575", "ani": 80.1272, "matched_fragments": 588, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014779655.1", "gtdb_species": "s__Nocardioides ganghwensis", "ani": 80.1263, "matched_fragments": 591, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016735675.1", "gtdb_species": "s__Nocardioides sp016735675", "ani": 80.1198, "matched_fragments": 570, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003047295.1", "gtdb_species": "s__Nocardioides sediminis", "ani": 80.0878, "matched_fragments": 568, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014653115.1", "gtdb_species": "s__Nocardioides flavus", "ani": 80.0482, "matched_fragments": 596, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004785795.1", "gtdb_species": "s__Nocardioides eburneiflavus", "ani": 80.0289, "matched_fragments": 580, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017916455.1", "gtdb_species": "s__Nocardioides sp017916455", "ani": 80.0262, "matched_fragments": 569, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.92", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900105585.1", "gtdb_species": "s__Nocardioides exalbidus", "ani": 80.0212, "matched_fragments": 603, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907475.1", "gtdb_species": "s__Nocardioides cavernae", "ani": 80.0157, "matched_fragments": 594, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013155375.1", "gtdb_species": "s__Nocardioides sp013155375", "ani": 80.0123, "matched_fragments": 567, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003047265.1", "gtdb_species": "s__Nocardioides terrigena", "ani": 79.9524, "matched_fragments": 567, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.44", "min_intra_species_ani": "95.44", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004137255.1", "gtdb_species": "s__Nocardioides oleivorans", "ani": 79.9163, "matched_fragments": 593, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001429625.1", "gtdb_species": "s__Nocardioides sp001429625", "ani": 79.9139, "matched_fragments": 594, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003047285.1", "gtdb_species": "s__Nocardioides allogilvus", "ani": 79.9046, "matched_fragments": 559, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006007965.1", "gtdb_species": "s__Nocardioides sp006007965", "ani": 79.8483, "matched_fragments": 513, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003057875.1", "gtdb_species": "s__Nocardioides currus", "ani": 79.7391, "matched_fragments": 584, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003076135.1", "gtdb_species": "s__Nocardioides gansuensis", "ani": 79.6765, "matched_fragments": 533, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907435.1", "gtdb_species": "s__Nocardioides salarius", "ani": 79.6701, "matched_fragments": 539, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011420305.2", "gtdb_species": "s__Nocardioides sp011420305", "ani": 79.5196, "matched_fragments": 549, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000519005.1", "gtdb_species": "s__Nocardioides sp000519005", "ani": 79.3113, "matched_fragments": 532, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004014875.1", "gtdb_species": "s__Nocardioides sp004014875", "ani": 79.2159, "matched_fragments": 418, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004919105.1", "gtdb_species": "s__Nocardioides sp004919105", "ani": 79.1203, "matched_fragments": 485, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014191495.1", "gtdb_species": "s__Nocardioides soli", "ani": 79.0406, "matched_fragments": 542, "total_fragments": 1255, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Propionibacteriales", "f__Nocardioidaceae", "g__Nocardioides", "s__Nocardioides sp023460975" ], "_genome_taxon": [ "Actinomycetia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Propionibacteriales", "f__Nocardioidaceae", "g__Nocardioides", "s__Nocardioides sp023460975", "Bacteria", "Actinomycetota", "Actinomycetes", "Propionibacteriales", "Nocardioidaceae", "Nocardioides", "Nocardioides", "sp023460975" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }