{
    "type": "genome",
    "identifier": "GCA_023462185.1",
    "organism": "Bacillota bacterium",
    "title": "Bacillota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "LNCC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023462185.1",
        "bioproject": "PRJNA682348",
        "biosample": "SAMN17045822",
        "wgs_master": "JAEYIO000000000.1",
        "refseq_category": "na",
        "taxid": "1879010",
        "species_taxid": "1879010",
        "organism_name": "Bacillota bacterium",
        "infraspecific_name": "",
        "isolate": "OH_HFB_36",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/17",
        "asm_name": "ASM2346218v1",
        "submitter": "LNCC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/462/185/GCA_023462185.1_ASM2346218v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-17",
    "dateModified": "2022-05-17",
    "datePublished": "2022-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacillota bacterium"
        ],
        "sample_taxid": [
            "1879010"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Brazil: Fortaleza"
        ],
        "sample_host_location_id": [],
        "data_size": "0.511 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1804426",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "122758",
        "N50 (bp)": "44255",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.9",
        "Number of CDSs": "1656",
        "Average Protein Length": "303.7",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ligilactobacillus ruminis",
                "strain": "strain=DSM 20403",
                "accession": "GCA_900113455.1",
                "taxid": 1623,
                "species_taxid": 1623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0435,
                "matched_fragments": 497,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus ruminis",
                "strain": "strain=ATCC 27780",
                "accession": "GCA_001008755.1",
                "taxid": 1623,
                "species_taxid": 1623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0179,
                "matched_fragments": 494,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus ruminis",
                "strain": "strain=DSM 20403",
                "accession": "GCA_001436475.1",
                "taxid": 1623,
                "species_taxid": 1623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.997,
                "matched_fragments": 487,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus ruminis",
                "strain": "strain=NBRC 102161",
                "accession": "GCA_001591905.1",
                "taxid": 1623,
                "species_taxid": 1623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9604,
                "matched_fragments": 474,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Ligilactobacillus animalis",
                "strain": "strain=KCTC 3501",
                "accession": "GCA_000183825.1",
                "taxid": 1605,
                "species_taxid": 1605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8891,
                "matched_fragments": 62,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ligilactobacillus murinus",
                "strain": "strain=DSM 20452",
                "accession": "GCA_001436015.1",
                "taxid": 1622,
                "species_taxid": 1622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8344,
                "matched_fragments": 58,
                "total_fragments": 566,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900113455.1",
                "gtdb_species": "s__Ligilactobacillus ruminis",
                "ani": 97.0066,
                "matched_fragments": 498,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 57,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001434535.1",
                "gtdb_species": "s__Ligilactobacillus animalis",
                "ani": 79.0761,
                "matched_fragments": 56,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "95.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_900110005.1",
                "gtdb_species": "s__Ligilactobacillus ruminis_A",
                "ani": 79.0003,
                "matched_fragments": 132,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.72",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001591685.1",
                "gtdb_species": "s__Ligilactobacillus murinus",
                "ani": 78.7386,
                "matched_fragments": 56,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 62,
                "status": "-"
            },
            {
                "accession": "GCA_910587695.1",
                "gtdb_species": "s__Ligilactobacillus sp910587695",
                "ani": 78.6066,
                "matched_fragments": 58,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905204935.1",
                "gtdb_species": "s__Ligilactobacillus sp900765635",
                "ani": 78.1483,
                "matched_fragments": 50,
                "total_fragments": 566,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Ligilactobacillus",
        "s__Ligilactobacillus ruminis"
    ],
    "_genome_taxon": [
        "Bacillota",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Ligilactobacillus",
        "s__Ligilactobacillus ruminis",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Ligilactobacillus",
        "Ligilactobacillus",
        "ruminis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}