{ "type": "genome", "identifier": "GCA_023473795.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-Sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023473795.1", "bioproject": "PRJNA666095", "biosample": "SAMN27868486", "wgs_master": "JAMCYS000000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "FK_Sedi_B_Bin.34", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/18", "asm_name": "ASM2347379v1", "submitter": "Sun Yat-Sen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/473/795/GCA_023473795.1_ASM2347379v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-18", "dateModified": "2022-05-18", "datePublished": "2022-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong" ], "sample_host_location_id": [], "data_size": "1.247 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4438761", "Number of Sequences": "170", "Longest Sequences (bp)": "133685", "N50 (bp)": "40893", "Gap Ratio (%)": "0.105187", "GCcontent (%)": "65.6", "Number of CDSs": "4091", "Average Protein Length": "306.5", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Symbiobacterium terraclitae", "strain": "strain=DSM 27138", "accession": "GCA_017874315.1", "taxid": 557451, "species_taxid": 557451, "relation_to_type": "type", "validated": true, "ani": 75.0697, "matched_fragments": 63, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter alkalitolerans", "strain": "strain=KACC 19305", "accession": "GCA_016722765.1", "taxid": 2039631, "species_taxid": 2039631, "relation_to_type": "type", "validated": true, "ani": 75.0228, "matched_fragments": 60, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 74.9581, "matched_fragments": 56, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 74.8639, "matched_fragments": 62, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 74.8325, "matched_fragments": 55, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinospica durhamensis", "strain": "strain=CSCA 57", "accession": "GCA_018139695.1", "taxid": 1508375, "species_taxid": 1508375, "relation_to_type": "type", "validated": true, "ani": 74.7751, "matched_fragments": 82, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 74.7248, "matched_fragments": 52, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 74.7187, "matched_fragments": 54, "total_fragments": 1397, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011051445.1", "gtdb_species": "s__DSKJ01 sp011051445", "ani": 75.6051, "matched_fragments": 69, "total_fragments": 1397, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__FW602-bin22;o__FW602-bin22;f__DSKJ01;g__DSKJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016190465.1", "gtdb_species": "s__JACPQP01 sp016190465", "ani": 75.602, "matched_fragments": 57, "total_fragments": 1397, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__FW602-bin22;o__FW602-bin22;f__JACPQP01;g__JACPQP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011047455.1", "gtdb_species": "s__HRBIN24 sp011047455", "ani": 75.3128, "matched_fragments": 66, "total_fragments": 1397, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__SM23-28-2;f__HRbin24;g__HRBIN24", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011772445.1", "gtdb_species": "s__Hydrogenophaga sp011772445", "ani": 74.9791, "matched_fragments": 52, "total_fragments": 1397, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002858765.1", "gtdb_species": "s__Cupriavidus pauculus_B", "ani": 74.9009, "matched_fragments": 50, "total_fragments": 1397, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__FW602-bin22", "o__FW602-bin22", "f__JAMCYS01", "g__JAMCYS01", "s__JAMCYS01 sp023473795" ], "_genome_taxon": [ "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__FW602-bin22", "o__FW602-bin22", "f__JAMCYS01", "g__JAMCYS01", "s__JAMCYS01 sp023473795", "Bacteria", "Chloroflexota", "FW602-bin22", "FW602-bin22", "JAMCYS01", "JAMCYS01", "JAMCYS01", "sp023473795" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }