{
    "type": "genome",
    "identifier": "GCA_023480765.1",
    "organism": "Nitrospirota bacterium",
    "title": "Nitrospirota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-Sen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023480765.1",
        "bioproject": "PRJNA666095",
        "biosample": "SAMN27868440",
        "wgs_master": "JAMCWZ000000000.1",
        "refseq_category": "na",
        "taxid": "2026887",
        "species_taxid": "2026887",
        "organism_name": "Nitrospirota bacterium",
        "infraspecific_name": "",
        "isolate": "FK_Sedi_B_Bin.46",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/18",
        "asm_name": "ASM2348076v1",
        "submitter": "Sun Yat-Sen University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/480/765/GCA_023480765.1_ASM2348076v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-18",
    "dateModified": "2022-05-18",
    "datePublished": "2022-05-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospirota bacterium"
        ],
        "sample_taxid": [
            "2026887"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangdong"
        ],
        "sample_host_location_id": [],
        "data_size": "0.288 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.81,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "999133",
        "Number of Sequences": "128",
        "Longest Sequences (bp)": "42417",
        "N50 (bp)": "10300",
        "Gap Ratio (%)": "0.038333",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "891",
        "Average Protein Length": "276.8",
        "Coding Ratio (%)": "74.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Leptospirillum ferriphilum",
                "strain": "strain=DSM 14647",
                "accession": "GCA_000755505.1",
                "taxid": 178606,
                "species_taxid": 178606,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 91.9383,
                "matched_fragments": 225,
                "total_fragments": 283,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.81,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000299235.1",
                "gtdb_species": "s__Leptospirillum_A rubarum",
                "ani": 94.3755,
                "matched_fragments": 231,
                "total_fragments": 283,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota_A;c__Leptospirillia;o__Leptospirillales;f__Leptospirillaceae;g__Leptospirillum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_000755505.1",
                "gtdb_species": "s__Leptospirillum_A ferriphilum",
                "ani": 91.9383,
                "matched_fragments": 225,
                "total_fragments": 283,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota_A;c__Leptospirillia;o__Leptospirillales;f__Leptospirillaceae;g__Leptospirillum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011332985.1",
                "gtdb_species": "s__Leptospirillum_A ferriphilum_B",
                "ani": 77.562,
                "matched_fragments": 78,
                "total_fragments": 283,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota_A;c__Leptospirillia;o__Leptospirillales;f__Leptospirillaceae;g__Leptospirillum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota_A",
        "c__Leptospirillia",
        "o__Leptospirillales",
        "f__Leptospirillaceae",
        "g__Leptospirillum_A",
        "s__Leptospirillum_A sp023480765"
    ],
    "_genome_taxon": [
        "Nitrospirota",
        "bacterium",
        "d__Bacteria",
        "p__Nitrospirota_A",
        "c__Leptospirillia",
        "o__Leptospirillales",
        "f__Leptospirillaceae",
        "g__Leptospirillum_A",
        "s__Leptospirillum_A sp023480765",
        "Bacteria",
        "Nitrospirota",
        "A",
        "Leptospirillia",
        "Leptospirillales",
        "Leptospirillaceae",
        "Leptospirillum",
        "A",
        "Leptospirillum",
        "A",
        "sp023480765"
    ],
    "_meo": [
        {
            "id": "MEO_0000034",
            "label": "acid mine drainage"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}