{
    "type": "genome",
    "identifier": "GCA_023666545.1",
    "organism": "Candidatus Amulumruptor caecigallinarius",
    "title": "Candidatus Amulumruptor caecigallinarius",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Cleveland Clinic",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023666545.1",
        "bioproject": "PRJNA833303",
        "biosample": "SAMN18820507",
        "wgs_master": "JAMPBU000000000.1",
        "refseq_category": "na",
        "taxid": "2109911",
        "species_taxid": "2109911",
        "organism_name": "Candidatus Amulumruptor caecigallinarius",
        "infraspecific_name": "",
        "isolate": "NALB_7821a_14",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/07",
        "asm_name": "ASM2366654v1",
        "submitter": "Cleveland Clinic",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/666/545/GCA_023666545.1_ASM2366654v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-07",
    "dateModified": "2022-06-07",
    "datePublished": "2022-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Amulumruptor caecigallinarius"
        ],
        "sample_taxid": [
            "2109911"
        ],
        "sample_host_organism": [
            "Neotoma albigula"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Salt Lake City"
        ],
        "sample_host_location_id": [],
        "data_size": "0.291 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1078136",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "149764",
        "N50 (bp)": "55952",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "25.4",
        "Number of CDSs": "1081",
        "Average Protein Length": "294.5",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900546275.1",
                "gtdb_species": "s__UMGS872 sp900546275",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS872",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_905215145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS872",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547995.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UMGS1045",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900544605.1",
                "gtdb_species": "s__SIG204 sp900544605",
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                "matched_fragments": 61,
                "total_fragments": 345,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__SIG204",
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                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015059285.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__SIG208",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_000432255.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Faecisoma",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_905206805.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA5026",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_017936845.1",
                "gtdb_species": "s__UBA5026 sp017936845",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA5026",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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                "gtdb_species": "s__RGIG4382 sp017459425",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_017527675.1",
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            {
                "accession": "GCA_017536505.1",
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            },
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                "accession": "GCA_015059545.1",
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            },
            {
                "accession": "GCA_018716405.1",
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                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__UMGS872",
        "s__UMGS872 sp023665725"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Amulumruptor",
        "caecigallinarius",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__UMGS872",
        "s__UMGS872 sp023665725",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "RF39",
        "UBA660",
        "UMGS872",
        "UMGS872",
        "sp023665725"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}