{
    "type": "genome",
    "identifier": "GCA_023667385.1",
    "organism": "Ruminococcus sp.",
    "title": "Ruminococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Cleveland Clinic",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_023667385.1",
        "bioproject": "PRJNA833303",
        "biosample": "SAMN18820547",
        "wgs_master": "JAMPAE000000000.1",
        "refseq_category": "na",
        "taxid": "41978",
        "species_taxid": "41978",
        "organism_name": "Ruminococcus sp.",
        "infraspecific_name": "",
        "isolate": "NALB_7813_22",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/07",
        "asm_name": "ASM2366738v1",
        "submitter": "Cleveland Clinic",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/667/385/GCA_023667385.1_ASM2366738v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-07",
    "dateModified": "2022-06-07",
    "datePublished": "2022-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ruminococcus sp."
        ],
        "sample_taxid": [
            "41978"
        ],
        "sample_host_organism": [
            "Neotoma albigula"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Salt Lake City"
        ],
        "sample_host_location_id": [],
        "data_size": "0.516 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1826271",
        "Number of Sequences": "256",
        "Longest Sequences (bp)": "52833",
        "N50 (bp)": "7593",
        "Gap Ratio (%)": "0.005476",
        "GCcontent (%)": "42.8",
        "Number of CDSs": "1459",
        "Average Protein Length": "299.1",
        "Coding Ratio (%)": "71.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002451715.1",
                "gtdb_species": "s__UBA6857 sp002451715",
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                "matched_fragments": 72,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017474045.1",
                "gtdb_species": "s__UBA6857 sp017474045",
                "ani": 77.6851,
                "matched_fragments": 106,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900767015.1",
                "gtdb_species": "s__UBA6857 sp900767015",
                "ani": 77.4712,
                "matched_fragments": 79,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015066015.1",
                "gtdb_species": "s__UBA6857 sp015066015",
                "ani": 77.3196,
                "matched_fragments": 58,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017425745.1",
                "gtdb_species": "s__UBA6857 sp017425745",
                "ani": 77.3182,
                "matched_fragments": 62,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017473435.1",
                "gtdb_species": "s__UBA6857 sp017473435",
                "ani": 77.2934,
                "matched_fragments": 61,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017472225.1",
                "gtdb_species": "s__UBA6857 sp017472225",
                "ani": 77.1615,
                "matched_fragments": 84,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015066105.1",
                "gtdb_species": "s__UBA6857 sp015066105",
                "ani": 76.9966,
                "matched_fragments": 75,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016292575.1",
                "gtdb_species": "s__UBA6857 sp016292575",
                "ani": 76.9553,
                "matched_fragments": 63,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002438505.1",
                "gtdb_species": "s__UBA6857 sp002438505",
                "ani": 76.935,
                "matched_fragments": 87,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016292455.1",
                "gtdb_species": "s__UBA6857 sp016292455",
                "ani": 76.3832,
                "matched_fragments": 79,
                "total_fragments": 498,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.18,
        "cell_length": -0.18,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.7,
        "optimum_ph": 7.0,
        "genome_size": 3334855.36,
        "gc_content": 43.875,
        "coding_genes": 2772.666,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 64.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__UBA6857",
        "s__UBA6857 sp023667385"
    ],
    "_genome_taxon": [
        "Ruminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__UBA6857",
        "s__UBA6857 sp023667385",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "UBA6857",
        "UBA6857",
        "sp023667385"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}