{ "type": "genome", "identifier": "GCA_023700985.1", "organism": "Lysobacter sp.", "title": "Lysobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023700985.1", "bioproject": "PRJNA741716", "biosample": "SAMN28659047", "wgs_master": "JAMPXV000000000.1", "refseq_category": "na", "taxid": "72226", "species_taxid": "72226", "organism_name": "Lysobacter sp.", "infraspecific_name": "", "isolate": "R2F_R2FSRR_metabat.48", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370098v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/700/985/GCA_023700985.1_ASM2370098v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter sp." ], "sample_taxid": [ "72226" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Tehran" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 80.73, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3446222", "Number of Sequences": "319", "Longest Sequences (bp)": "46258", "N50 (bp)": "15980", "Gap Ratio (%)": "0.000000", "GCcontent (%)": 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"relation_to_type": "type", "validated": true, "ani": 77.6802, "matched_fragments": 253, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 77.4321, "matched_fragments": 262, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 76.913, "matched_fragments": 242, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malikia granosa", "strain": "strain=P1", "accession": "GCA_002980595.1", "taxid": 263067, "species_taxid": 263067, "relation_to_type": "type", "validated": true, "ani": 76.8741, "matched_fragments": 158, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 76.6795, "matched_fragments": 265, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 76.5714, "matched_fragments": 191, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 76.5554, "matched_fragments": 201, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter mangrovi", "strain": "strain=M9-3-2", "accession": "GCA_010983895.1", "taxid": 2016596, "species_taxid": 2016596, "relation_to_type": "type", "validated": true, "ani": 76.5317, "matched_fragments": 202, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 76.449, "matched_fragments": 84, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas mephitis", "strain": "strain=DSM 12574", "accession": "GCA_000422305.1", "taxid": 83615, "species_taxid": 83615, "relation_to_type": "type", "validated": true, "ani": 76.1733, "matched_fragments": 125, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.352, "cell_length": 0.341, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 28.882, "optimum_ph": 7.253, "genome_size": 4192346.458, "gc_content": 68.113, "coding_genes": 4691.193, "rRNA16S_genes": 2.166, "tRNA_genes": 53.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.411, "range_salinity": null, "facultative_respiration": 0.117, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.882, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.882, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.058, "vibrio_cell_shape": 0.058, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Usitatibacteraceae", "g__FEB-7", "s__FEB-7 sp023700985" ], "_genome_taxon": [ "Lysobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", 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